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* octopus-caller: fix `gcc-13` build failure (drop `-Werror`)Sergei Trofimovich2024-02-20
* last: 1540 -> 1541R. Ryantm2024-02-14
* Merge pull request #287721 from trofi/megahit-gcc-13-fixkirillrdy2024-02-14
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| * megahit: fir `gcc-13` build failureSergei Trofimovich2024-02-10
* | Merge pull request #287985 from trofi/svaba-gcc-13-fixkirillrdy2024-02-14
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| * | svaba: fix `gcc-13` build failureSergei Trofimovich2024-02-11
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* | Merge pull request #286906 from ashgillman/masterNick Cao2024-02-11
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| * dcm2niix: 1.0.20211006 -> 1.0.20230411Ashley Gillman2024-02-07
* | hh-suite: fix build on GCC 13Manuel Frischknecht2024-02-08
* | last: 1519 -> 1540R. Ryantm2024-02-06
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* Merge pull request #285426 from r-ryantm/auto-update/seqkitRobert Scott2024-02-04
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| * seqkit: 2.6.1 -> 2.7.0R. Ryantm2024-02-01
* | Merge pull request #281847 from r-ryantm/auto-update/eggnog-mapperWeijia Wang2024-02-04
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| * | eggnog-mapper: 2.1.10 -> 2.1.12R. Ryantm2024-01-18
* | | Merge pull request #281665 from r-ryantm/auto-update/bowtie2Weijia Wang2024-02-04
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| * | | bowtie2: 2.5.2 -> 2.5.3R. Ryantm2024-01-18
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* | | igv: use jdk17 instead of jdk11 (#285521)Rolf Schröder2024-02-01
* | | Merge pull request #222817 from SuperSandro2000/python-sitePackagesPeder Bergebakken Sundt2024-01-31
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| * | | treewide: replace `lib/${python.libPrefix}/site-packages` with its shorthand ...Sandro Jäckel2024-01-30
* | | | Merge pull request #284607 from dotlambda/deeptools-fixSandro2024-01-30
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| * | | deeptools: fix buildRobert Schütz2024-01-28
* | | | samtools: 1.19 -> 1.19.2R. Ryantm2024-01-28
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* | | Merge pull request #283816 from trofi/whisper-gcc-13-fixMaximilian Bosch2024-01-26
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| * | | whisper: enable parallel buildingSergei Trofimovich2024-01-25
| * | | whisper: fix `gcc-13` build failureSergei Trofimovich2024-01-25
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* / / ants: 2.5.0 -> 2.5.1R. Ryantm2024-01-26
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* | Merge pull request #283425 from r-ryantm/auto-update/stacksNick Cao2024-01-24
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| * | stacks: 2.65 -> 2.66R. Ryantm2024-01-24
* | | igv: 2.17.0 -> 2.17.1R. Ryantm2024-01-24
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* | Merge pull request #282666 from wegank/ebtks-refactorWeijia Wang2024-01-23
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| * | inormalize: fix build on darwinWeijia Wang2024-01-21
| * | n3: fix build on darwinWeijia Wang2024-01-21
| * | ebtks: migrate to by-name, rename from EBTKSWeijia Wang2024-01-21
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* / SPAdes: fix buildsuperherointj2024-01-20
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* Merge pull request #279509 from r-ryantm/auto-update/igvWeijia Wang2024-01-13
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| * igv: 2.16.2 -> 2.17.0R. Ryantm2024-01-08
* | Merge pull request #278776 from TomaSajt/trimmomaticWeijia Wang2024-01-11
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| * trimmomatic: make deterministic and clean upTomaSajt2024-01-04
* | Merge pull request #276101 from r-ryantm/auto-update/dellyWeijia Wang2024-01-03
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| * delly: 1.1.8 -> 1.2.6R. Ryantm2023-12-22
* | Merge pull request #276231 from r-ryantm/auto-update/samtoolsFabián Heredia Montiel2023-12-24
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| * | samtools: 1.18 -> 1.19R. Ryantm2023-12-23
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* / seqkit: 2.6.0 -> 2.6.1R. Ryantm2023-12-23
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* Merge pull request #274810 from r-ryantm/auto-update/messer-slimOTABI Tomoya2023-12-21
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| * messer-slim: 4.0.1 -> 4.1R. Ryantm2023-12-16
* | Merge pull request #275350 from r-ryantm/auto-update/lastJustin Bedő2023-12-20
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| * | last: 1518 -> 1519R. Ryantm2023-12-19
* | | Merge pull request #273915 from r-ryantm/auto-update/bcftoolsOTABI Tomoya2023-12-19
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| * | bcftools: 1.18 -> 1.19R. Ryantm2023-12-13
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* / gatk: 4.4.0.0 -> 4.5.0.0R. Ryantm2023-12-15
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