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| author | kirillrdy <kirillrdy@gmail.com> | 2024-02-14 20:07:39 +1100 |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2024-02-14 20:07:39 +1100 |
| commit | cd54cfb658332c311cbfeeb29f3df327b7556b70 (patch) | |
| tree | 5dfb1926162428cdb67187c02a1b78c346a30ade /pkgs/applications/science/biology | |
| parent | 5df6af84d464ce34022137bc8b2cac2885723448 (diff) | |
| parent | a59d5e302874e2c3dc4e08693ae43635fd2f0157 (diff) | |
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Merge pull request #287985 from trofi/svaba-gcc-13-fix
svaba: fix `gcc-13` build failure
Diffstat (limited to 'pkgs/applications/science/biology')
| -rw-r--r-- | pkgs/applications/science/biology/svaba/default.nix | 7 |
1 files changed, 7 insertions, 0 deletions
diff --git a/pkgs/applications/science/biology/svaba/default.nix b/pkgs/applications/science/biology/svaba/default.nix index 441c7ed6dcc3..d36c4b668ec3 100644 --- a/pkgs/applications/science/biology/svaba/default.nix +++ b/pkgs/applications/science/biology/svaba/default.nix @@ -14,6 +14,13 @@ stdenv.mkDerivation rec { buildInputs = [ zlib bzip2 xz ]; + postPatch = '' + # Fix gcc-13 build failure due to missing includes + sed -e '1i #include <cstdint>' -i \ + SeqLib/src/non_api/Histogram.h \ + src/svaba/Histogram.h + ''; + # Workaround build failure on -fno-common toolchains like upstream # gcc-10. Otherwise build fails as: # ld: ./libfml.a(rle.o):/build/source/SeqLib/fermi-lite/rle.h:33: multiple definition of |