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| author | Manuel Frischknecht <manuel.frischknecht@gmail.com> | 2024-02-08 21:54:47 +0000 |
|---|---|---|
| committer | Manuel Frischknecht <manuel.frischknecht@gmail.com> | 2024-02-08 21:54:47 +0000 |
| commit | 14a19fa225289d23b1c4f13d98e15480a25b9331 (patch) | |
| tree | dc9ccc8914ec42fde063d02ad72dd1e1218ee7f1 /pkgs/applications/science/biology | |
| parent | a5d28c9bffb49868ca5688e5767d0782a995163b (diff) | |
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hh-suite: fix build on GCC 13
The build of `hh-suite` stopped working with GCC 13 because GCC stopped transitively including a couple of headers like `cstdint` in various scenarios. There already is an upstream PR proposed that fixes this issue [1] but hasn't been merged yet. This change pulls in this correction using `fetchpatch`, fixing the build for now. [1]: https://github.com/soedinglab/hh-suite/pull/357
Diffstat (limited to 'pkgs/applications/science/biology')
| -rw-r--r-- | pkgs/applications/science/biology/hh-suite/default.nix | 10 |
1 files changed, 10 insertions, 0 deletions
diff --git a/pkgs/applications/science/biology/hh-suite/default.nix b/pkgs/applications/science/biology/hh-suite/default.nix index 2e01ace7d0f1..76c6544b3430 100644 --- a/pkgs/applications/science/biology/hh-suite/default.nix +++ b/pkgs/applications/science/biology/hh-suite/default.nix @@ -1,6 +1,7 @@ { lib , stdenv , fetchFromGitHub +, fetchpatch , cmake , xxd , enableMpi ? false @@ -18,6 +19,15 @@ stdenv.mkDerivation rec { hash = "sha256-kjNqJddioCZoh/cZL3YNplweIGopWIGzCYQOnKDqZmw="; }; + patches = [ + # Should be removable as soon as this upstream PR is merged: https://github.com/soedinglab/hh-suite/pull/357 + (fetchpatch { + name = "fix-gcc13-build-issues.patch"; + url = "https://github.com/soedinglab/hh-suite/commit/cec47cba5dcd580e668b1ee507c9282fbdc8e7d7.patch"; + hash = "sha256-Msdmj9l8voPYXK0SSwUA6mEbFLBhTjjE/Kjp0VL4Kf4="; + }) + ]; + nativeBuildInputs = [ cmake xxd ]; cmakeFlags = lib.optional stdenv.hostPlatform.isx86 "-DHAVE_SSE2=1" ++ lib.optional stdenv.hostPlatform.isAarch "-DHAVE_ARM8=1" |