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| author | Rolf Schröder <58295931+rollf@users.noreply.github.com> | 2024-02-01 14:42:34 +0100 |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2024-02-01 14:42:34 +0100 |
| commit | f835df35c72f8140de5b8f1e263c98c59adaf49f (patch) | |
| tree | 74eecc7acc05a90080a73dd2dff32f2312b3d897 /pkgs/applications/science | |
| parent | dc7f958989924afceb37026879d9af58adc16d17 (diff) | |
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igv: use jdk17 instead of jdk11 (#285521)
Diffstat (limited to 'pkgs/applications/science')
| -rw-r--r-- | pkgs/applications/science/biology/igv/default.nix | 11 |
1 files changed, 8 insertions, 3 deletions
diff --git a/pkgs/applications/science/biology/igv/default.nix b/pkgs/applications/science/biology/igv/default.nix index f7be7119b85d..be663628a426 100644 --- a/pkgs/applications/science/biology/igv/default.nix +++ b/pkgs/applications/science/biology/igv/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchzip, jdk11, wrapGAppsHook }: +{ lib, stdenv, fetchzip, jdk17, testers, wrapGAppsHook, igv }: stdenv.mkDerivation rec { pname = "igv"; @@ -13,10 +13,10 @@ stdenv.mkDerivation rec { cp -Rv * $out/share/ sed -i "s#prefix=.*#prefix=$out/share#g" $out/share/igv.sh - sed -i 's#java#${jdk11}/bin/java#g' $out/share/igv.sh + sed -i 's#java#${jdk17}/bin/java#g' $out/share/igv.sh sed -i "s#prefix=.*#prefix=$out/share#g" $out/share/igvtools - sed -i 's#java#${jdk11}/bin/java#g' $out/share/igvtools + sed -i 's#java#${jdk17}/bin/java#g' $out/share/igvtools ln -s $out/share/igv.sh $out/bin/igv ln -s $out/share/igvtools $out/bin/igvtools @@ -26,6 +26,11 @@ stdenv.mkDerivation rec { ''; nativeBuildInputs = [ wrapGAppsHook ]; + passthru.tests.version = testers.testVersion { + package = igv; + }; + + meta = with lib; { homepage = "https://www.broadinstitute.org/igv/"; description = "A visualization tool for interactive exploration of genomic datasets"; |