From f835df35c72f8140de5b8f1e263c98c59adaf49f Mon Sep 17 00:00:00 2001
From: Rolf Schröder <58295931+rollf@users.noreply.github.com>
Date: Thu, 1 Feb 2024 14:42:34 +0100
Subject: igv: use jdk17 instead of jdk11 (#285521)

---
 pkgs/applications/science/biology/igv/default.nix | 11 ++++++++---
 1 file changed, 8 insertions(+), 3 deletions(-)

(limited to 'pkgs/applications/science')

diff --git a/pkgs/applications/science/biology/igv/default.nix b/pkgs/applications/science/biology/igv/default.nix
index f7be7119b85d..be663628a426 100644
--- a/pkgs/applications/science/biology/igv/default.nix
+++ b/pkgs/applications/science/biology/igv/default.nix
@@ -1,4 +1,4 @@
-{ lib, stdenv, fetchzip, jdk11, wrapGAppsHook }:
+{ lib, stdenv, fetchzip, jdk17, testers, wrapGAppsHook, igv }:
 
 stdenv.mkDerivation rec {
   pname = "igv";
@@ -13,10 +13,10 @@ stdenv.mkDerivation rec {
     cp -Rv * $out/share/
 
     sed -i "s#prefix=.*#prefix=$out/share#g" $out/share/igv.sh
-    sed -i 's#java#${jdk11}/bin/java#g' $out/share/igv.sh
+    sed -i 's#java#${jdk17}/bin/java#g' $out/share/igv.sh
 
     sed -i "s#prefix=.*#prefix=$out/share#g" $out/share/igvtools
-    sed -i 's#java#${jdk11}/bin/java#g' $out/share/igvtools
+    sed -i 's#java#${jdk17}/bin/java#g' $out/share/igvtools
 
     ln -s $out/share/igv.sh $out/bin/igv
     ln -s $out/share/igvtools $out/bin/igvtools
@@ -26,6 +26,11 @@ stdenv.mkDerivation rec {
   '';
   nativeBuildInputs = [ wrapGAppsHook ];
 
+  passthru.tests.version = testers.testVersion {
+    package = igv;
+  };
+
+
   meta = with lib; {
     homepage = "https://www.broadinstitute.org/igv/";
     description = "A visualization tool for interactive exploration of genomic datasets";
-- 
cgit 1.4.1