diff options
| author | Dmitry Kalinkin <dmitry.kalinkin@gmail.com> | 2023-12-12 16:04:33 -0500 |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2023-12-12 16:04:33 -0500 |
| commit | 1a5412e14030d2a00281021d5f8ef05b31027912 (patch) | |
| tree | cef37536c127b14b983990f959ede6700e4356d8 /pkgs/applications/science | |
| parent | ea9e108a0bafe81df7e0461f7286400e1db6c694 (diff) | |
| download | nixlib-1a5412e14030d2a00281021d5f8ef05b31027912.tar nixlib-1a5412e14030d2a00281021d5f8ef05b31027912.tar.gz nixlib-1a5412e14030d2a00281021d5f8ef05b31027912.tar.bz2 nixlib-1a5412e14030d2a00281021d5f8ef05b31027912.tar.lz nixlib-1a5412e14030d2a00281021d5f8ef05b31027912.tar.xz nixlib-1a5412e14030d2a00281021d5f8ef05b31027912.tar.zst nixlib-1a5412e14030d2a00281021d5f8ef05b31027912.zip | |
toil: 5.7.1 -> 5.12.0 (#273274)
Diffstat (limited to 'pkgs/applications/science')
| -rw-r--r-- | pkgs/applications/science/misc/toil/default.nix | 14 |
1 files changed, 6 insertions, 8 deletions
diff --git a/pkgs/applications/science/misc/toil/default.nix b/pkgs/applications/science/misc/toil/default.nix index 7fc070f4f9f7..9142676fff48 100644 --- a/pkgs/applications/science/misc/toil/default.nix +++ b/pkgs/applications/science/misc/toil/default.nix @@ -6,21 +6,16 @@ python3.pkgs.buildPythonApplication rec { pname = "toil"; - version = "5.7.1"; + version = "5.12.0"; format = "setuptools"; src = fetchFromGitHub { owner = "DataBiosphere"; repo = pname; rev = "refs/tags/releases/${version}"; - hash = "sha256-m+XvNyzd0ly2YqKhgxezgGaCXLs3CmupJMnp5RIZqNI="; + hash = "sha256-cTpbQo9tPZifUO59vbnIa3XUinFJ2/5Slfe4yszglFM="; }; - postPatch = '' - substituteInPlace requirements.txt \ - --replace "docker>=3.7.2, <6" "docker" - ''; - propagatedBuildInputs = with python3.pkgs; [ addict dill @@ -42,7 +37,6 @@ python3.pkgs.buildPythonApplication rec { boto botocore flask - mypy-boto3-s3 pytestCheckHook stubserver ]); @@ -63,6 +57,10 @@ python3.pkgs.buildPythonApplication rec { "src/toil/test/src" "src/toil/test/wdl" "src/toil/test/utils/utilsTest.py" + "src/toil/test/cwl/cwlTest.py" + "src/toil/test/lib/test_ec2.py" + "src/toil/test/lib/aws/test_iam.py" + "src/toil/test/lib/aws/test_s3.py" ]; disabledTests = [ |