From 1a5412e14030d2a00281021d5f8ef05b31027912 Mon Sep 17 00:00:00 2001
From: Dmitry Kalinkin <dmitry.kalinkin@gmail.com>
Date: Tue, 12 Dec 2023 16:04:33 -0500
Subject: toil: 5.7.1 -> 5.12.0 (#273274)

---
 pkgs/applications/science/misc/toil/default.nix | 14 ++++++--------
 1 file changed, 6 insertions(+), 8 deletions(-)

(limited to 'pkgs/applications/science')

diff --git a/pkgs/applications/science/misc/toil/default.nix b/pkgs/applications/science/misc/toil/default.nix
index 7fc070f4f9f7..9142676fff48 100644
--- a/pkgs/applications/science/misc/toil/default.nix
+++ b/pkgs/applications/science/misc/toil/default.nix
@@ -6,21 +6,16 @@
 
 python3.pkgs.buildPythonApplication rec {
   pname = "toil";
-  version = "5.7.1";
+  version = "5.12.0";
   format = "setuptools";
 
   src = fetchFromGitHub {
     owner = "DataBiosphere";
     repo = pname;
     rev = "refs/tags/releases/${version}";
-    hash = "sha256-m+XvNyzd0ly2YqKhgxezgGaCXLs3CmupJMnp5RIZqNI=";
+    hash = "sha256-cTpbQo9tPZifUO59vbnIa3XUinFJ2/5Slfe4yszglFM=";
   };
 
-  postPatch = ''
-    substituteInPlace requirements.txt \
-      --replace "docker>=3.7.2, <6" "docker"
-  '';
-
   propagatedBuildInputs = with python3.pkgs; [
     addict
     dill
@@ -42,7 +37,6 @@ python3.pkgs.buildPythonApplication rec {
     boto
     botocore
     flask
-    mypy-boto3-s3
     pytestCheckHook
     stubserver
   ]);
@@ -63,6 +57,10 @@ python3.pkgs.buildPythonApplication rec {
     "src/toil/test/src"
     "src/toil/test/wdl"
     "src/toil/test/utils/utilsTest.py"
+    "src/toil/test/cwl/cwlTest.py"
+    "src/toil/test/lib/test_ec2.py"
+    "src/toil/test/lib/aws/test_iam.py"
+    "src/toil/test/lib/aws/test_s3.py"
   ];
 
   disabledTests = [
-- 
cgit 1.4.1