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| author | mimadrid <mimadrid@ucm.es> | 2016-06-12 22:48:32 +0200 |
|---|---|---|
| committer | Joachim Fasting <joachifm@fastmail.fm> | 2016-06-16 15:47:21 +0200 |
| commit | 9b7a53d9cb6991f01444352e0e16b968fa32dbc4 (patch) | |
| tree | 1eda16c2d93a7a3db227f31347054585ade9e04f /pkgs/applications/science/misc | |
| parent | e915625ace2a46764a802818d8e22a9166aab7b7 (diff) | |
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cytoscape: init at 3.4.0
Closes #16197
Diffstat (limited to 'pkgs/applications/science/misc')
| -rw-r--r-- | pkgs/applications/science/misc/cytoscape/default.nix | 33 |
1 files changed, 33 insertions, 0 deletions
diff --git a/pkgs/applications/science/misc/cytoscape/default.nix b/pkgs/applications/science/misc/cytoscape/default.nix new file mode 100644 index 000000000000..108a089d9818 --- /dev/null +++ b/pkgs/applications/science/misc/cytoscape/default.nix @@ -0,0 +1,33 @@ +{ stdenv, fetchurl, jre, makeWrapper }: + +stdenv.mkDerivation rec { + name = "cytoscape-${version}"; + version = "3.4.0"; + + src = fetchurl { + url = "http://chianti.ucsd.edu/${name}/${name}.tar.gz"; + sha256 = "065fsqa01w7j85nljwwc0677lfw112xphnyn1c4hb04166q082p2"; + }; + + buildInputs = [jre makeWrapper]; + + installPhase = '' + mkdir -pv $out/{share,bin} + cp -Rv * $out/share/ + + ln -s $out/share/cytoscape.sh $out/bin/cytoscape + + wrapProgram $out/share/gen_vmoptions.sh \ + --set JAVA_HOME "${jre}" \ + --set JAVA "${jre}/bin/java" + + chmod +x $out/bin/cytoscape + ''; + + meta = { + homepage = "http://www.cytoscape.org"; + description = "A general platform for complex network analysis and visualization"; + license = stdenv.lib.licenses.lgpl21; + maintainers = [stdenv.lib.maintainers.mimadrid]; + }; +} |