diff options
| -rw-r--r-- | pkgs/applications/science/misc/cytoscape/default.nix | 33 | ||||
| -rw-r--r-- | pkgs/top-level/all-packages.nix | 2 |
2 files changed, 35 insertions, 0 deletions
diff --git a/pkgs/applications/science/misc/cytoscape/default.nix b/pkgs/applications/science/misc/cytoscape/default.nix new file mode 100644 index 000000000000..108a089d9818 --- /dev/null +++ b/pkgs/applications/science/misc/cytoscape/default.nix @@ -0,0 +1,33 @@ +{ stdenv, fetchurl, jre, makeWrapper }: + +stdenv.mkDerivation rec { + name = "cytoscape-${version}"; + version = "3.4.0"; + + src = fetchurl { + url = "http://chianti.ucsd.edu/${name}/${name}.tar.gz"; + sha256 = "065fsqa01w7j85nljwwc0677lfw112xphnyn1c4hb04166q082p2"; + }; + + buildInputs = [jre makeWrapper]; + + installPhase = '' + mkdir -pv $out/{share,bin} + cp -Rv * $out/share/ + + ln -s $out/share/cytoscape.sh $out/bin/cytoscape + + wrapProgram $out/share/gen_vmoptions.sh \ + --set JAVA_HOME "${jre}" \ + --set JAVA "${jre}/bin/java" + + chmod +x $out/bin/cytoscape + ''; + + meta = { + homepage = "http://www.cytoscape.org"; + description = "A general platform for complex network analysis and visualization"; + license = stdenv.lib.licenses.lgpl21; + maintainers = [stdenv.lib.maintainers.mimadrid]; + }; +} diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix index 4923a8b2659a..0eaeb2c99a5d 100644 --- a/pkgs/top-level/all-packages.nix +++ b/pkgs/top-level/all-packages.nix @@ -16386,6 +16386,8 @@ in inherit (pkgs.gnome) gtkglext; }; + cytoscape = callPackage ../applications/science/misc/cytoscape { }; + fityk = callPackage ../applications/science/misc/fityk { }; gravit = callPackage ../applications/science/astronomy/gravit { }; |