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| author | Tikhon Jelvis <tikhon@jelv.is> | 2021-01-02 14:20:29 -0800 |
|---|---|---|
| committer | Tikhon Jelvis <tikhon@jelv.is> | 2021-01-02 15:03:06 -0800 |
| commit | 70cd2cb336fb0ba75f52590e3e2674ea1dd39789 (patch) | |
| tree | 3965f9481c0fb2b219e3859fb7b05b7d8b8a6056 /doc | |
| parent | da613094f76df071b255d456eb6a124edeba2ce9 (diff) | |
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r-modules: update cran and bioc packages
The last snapshot was 4 months ago (2020-08-19). I also found that I needed newer definitions when I was trying to fix the R arrow package. This update required a couple of manual changes: 1. Removing a few deleted packages from default.nix 2. Renaming the "assert" package to "r_assert" in generate-r-packages.R because "assert" is a keyword in Nix
Diffstat (limited to 'doc')
| -rw-r--r-- | doc/languages-frameworks/r.section.md | 6 |
1 files changed, 6 insertions, 0 deletions
diff --git a/doc/languages-frameworks/r.section.md b/doc/languages-frameworks/r.section.md index d7154adc55bc..32a39ade2796 100644 --- a/doc/languages-frameworks/r.section.md +++ b/doc/languages-frameworks/r.section.md @@ -105,6 +105,12 @@ mv cran-packages.nix.new cran-packages.nix Rscript generate-r-packages.R bioc > bioc-packages.nix.new mv bioc-packages.nix.new bioc-packages.nix + +Rscript generate-r-packages.R bioc-annotation > bioc-annotation-packages.nix.new +mv bioc-annotation-packages.nix.new bioc-annotation-packages.nix + +Rscript generate-r-packages.R bioc-experiment > bioc-experiment-packages.nix.new +mv bioc-experiment-packages.nix.new bioc-experiment-packages.nix ``` `generate-r-packages.R <repo>` reads `<repo>-packages.nix`, therefor the renaming. |