From 70cd2cb336fb0ba75f52590e3e2674ea1dd39789 Mon Sep 17 00:00:00 2001 From: Tikhon Jelvis Date: Sat, 2 Jan 2021 14:20:29 -0800 Subject: r-modules: update cran and bioc packages The last snapshot was 4 months ago (2020-08-19). I also found that I needed newer definitions when I was trying to fix the R arrow package. This update required a couple of manual changes: 1. Removing a few deleted packages from default.nix 2. Renaming the "assert" package to "r_assert" in generate-r-packages.R because "assert" is a keyword in Nix --- doc/languages-frameworks/r.section.md | 6 ++++++ 1 file changed, 6 insertions(+) (limited to 'doc') diff --git a/doc/languages-frameworks/r.section.md b/doc/languages-frameworks/r.section.md index d7154adc55bc..32a39ade2796 100644 --- a/doc/languages-frameworks/r.section.md +++ b/doc/languages-frameworks/r.section.md @@ -105,6 +105,12 @@ mv cran-packages.nix.new cran-packages.nix Rscript generate-r-packages.R bioc > bioc-packages.nix.new mv bioc-packages.nix.new bioc-packages.nix + +Rscript generate-r-packages.R bioc-annotation > bioc-annotation-packages.nix.new +mv bioc-annotation-packages.nix.new bioc-annotation-packages.nix + +Rscript generate-r-packages.R bioc-experiment > bioc-experiment-packages.nix.new +mv bioc-experiment-packages.nix.new bioc-experiment-packages.nix ``` `generate-r-packages.R ` reads `-packages.nix`, therefor the renaming. -- cgit 1.4.1