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{ lib
, fetchPypi
, buildPythonPackage
, pythonOlder
, rustPlatform
, bitstring
, cachetools
, cffi
, deprecation
, iconv
, matplotlib
, numpy
, scipy
, screed
, hypothesis
, pytest-xdist
, pyyaml
, pytestCheckHook
}:
buildPythonPackage rec {
pname = "sourmash";
version = "4.8.4";
format = "pyproject";
disabled = pythonOlder "3.8";
src = fetchPypi {
inherit pname version;
hash = "sha256-Q1hMESwzEHGXcd4XW4nLqU8cLTCxrqRgAOr1qB77roo=";
};
cargoDeps = rustPlatform.fetchCargoTarball {
inherit src;
name = "${pname}-${version}";
hash = "sha256-HisWvJgx15OfYoMzzqYm1JyY1/jmGXBSZZmuNaKTDjI=";
};
nativeBuildInputs = with rustPlatform; [
cargoSetupHook
maturinBuildHook
];
buildInputs = [ iconv ];
propagatedBuildInputs = [
bitstring
cachetools
cffi
deprecation
matplotlib
numpy
scipy
screed
];
pythonImportsCheck = [ "sourmash" ];
nativeCheckInputs = [
hypothesis
pytest-xdist
pytestCheckHook
pyyaml
];
# TODO(luizirber): Working on fixing these upstream
disabledTests = [
"test_compare_no_such_file"
"test_do_sourmash_index_multiscaled_rescale_fail"
"test_metagenome_kreport_out_fail"
];
meta = with lib; {
description = "Quickly search, compare, and analyze genomic and metagenomic data sets";
mainProgram = "sourmash";
homepage = "https://sourmash.bio";
changelog = "https://github.com/sourmash-bio/sourmash/releases/tag/v${version}";
maintainers = with maintainers; [ luizirber ];
license = licenses.bsd3;
};
}
|