1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
|
{ lib
, stdenv
, fetchPypi
, python
, buildPythonPackage
, gfortran
, nose
, pytest
, pytest-xdist
, numpy
, pybind11
}:
buildPythonPackage rec {
pname = "scipy";
version = "1.6.3";
src = fetchPypi {
inherit pname version;
sha256 = "a75b014d3294fce26852a9d04ea27b5671d86736beb34acdfc05859246260707";
};
checkInputs = [ nose pytest pytest-xdist ];
nativeBuildInputs = [ gfortran ];
buildInputs = [ numpy.blas pybind11 ];
propagatedBuildInputs = [ numpy ];
# Remove tests because of broken wrapper
prePatch = ''
rm scipy/linalg/tests/test_lapack.py
'';
doCheck = true;
preConfigure = ''
sed -i '0,/from numpy.distutils.core/s//import setuptools;from numpy.distutils.core/' setup.py
export NPY_NUM_BUILD_JOBS=$NIX_BUILD_CORES
'';
preBuild = ''
ln -s ${numpy.cfg} site.cfg
'';
# disable stackprotector on aarch64-darwin for now
#
# build error:
#
# /private/tmp/nix-build-python3.9-scipy-1.6.3.drv-0/ccDEsw5U.s:109:15: error: index must be an integer in range [-256, 255].
#
# ldr x0, [x0, ___stack_chk_guard];momd
#
hardeningDisable = lib.optionals (stdenv.isAarch64 && stdenv.isDarwin) [ "stackprotector" ];
checkPhase = ''
runHook preCheck
pushd dist
${python.interpreter} -c "import scipy; scipy.test('fast', verbose=10, parallel=$NIX_BUILD_CORES)"
popd
runHook postCheck
'';
passthru = {
blas = numpy.blas;
};
setupPyBuildFlags = [ "--fcompiler='gnu95'" ];
SCIPY_USE_G77_ABI_WRAPPER = 1;
meta = with lib; {
description = "SciPy (pronounced 'Sigh Pie') is open-source software for mathematics, science, and engineering";
homepage = "https://www.scipy.org/";
license = licenses.bsd3;
maintainers = [ maintainers.fridh ];
};
}
|