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{ lib
, buildPythonPackage
, fetchPypi
, cython
, ecos
, joblib
, numexpr
, numpy
, osqp
, pandas
, scikit-learn
, scipy
, pytestCheckHook
}:
buildPythonPackage rec {
pname = "scikit-survival";
version = "0.15.0.post0";
src = fetchPypi {
inherit pname version;
sha256 = "572c3ac6818a9d0944fc4b8176eb948051654de857e28419ecc5060bcc6fbf37";
};
nativeBuildInputs = [
cython
];
propagatedBuildInputs = [
ecos
joblib
numexpr
numpy
osqp
pandas
scikit-learn
scipy
];
pythonImportsCheck = [ "sksurv" ];
checkInputs = [ pytestCheckHook ];
# Hack needed to make pytest + cython work
# https://github.com/NixOS/nixpkgs/pull/82410#issuecomment-827186298
preCheck = ''
export HOME=$(mktemp -d)
cp -r $TMP/$sourceRoot/tests $HOME
pushd $HOME
'';
postCheck = "popd";
# very long tests, unnecessary for a leaf package
disabledTests = [
"test_coxph"
"test_datasets"
"test_ensemble_selection"
"test_minlip"
"test_pandas_inputs"
"test_survival_svm"
"test_tree"
];
meta = with lib; {
description = "Survival analysis built on top of scikit-learn";
homepage = "https://github.com/sebp/scikit-survival";
license = licenses.gpl3Only;
maintainers = with maintainers; [ GuillaumeDesforges ];
};
}
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