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{ lib
, buildPythonPackage
, fetchPypi
, cython
, lockfile
, cachecontrol
, decorator
, h5py
, ipython
, matplotlib
, natsort
, numpy
, pandas
, scipy
, hdmedians
, scikit-learn
, coverage
, python
, isPy3k
}:
buildPythonPackage rec {
version = "0.5.9";
pname = "scikit-bio";
disabled = !isPy3k;
src = fetchPypi {
inherit pname version;
hash = "sha256-euBE3IvuIxkAJIrcOoZZB352FA1WrJ9CvQH7eYEBSRA=";
};
nativeBuildInputs = [ cython ];
nativeCheckInputs = [ coverage ];
propagatedBuildInputs = [ lockfile cachecontrol decorator ipython matplotlib natsort numpy pandas scipy h5py hdmedians scikit-learn ];
# cython package not included for tests
doCheck = false;
checkPhase = ''
${python.interpreter} -m skbio.test
'';
pythonImportsCheck = [ "skbio" ];
meta = with lib; {
homepage = "http://scikit-bio.org/";
description = "Data structures, algorithms and educational resources for bioinformatics";
license = licenses.bsd3;
platforms = [ "x86_64-linux" "x86_64-darwin" ];
maintainers = [ ];
};
}
|