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{ lib
, buildPythonPackage
, fetchFromGitHub
, numpy
, pytestCheckHook
, pythonOlder
, zlib
}:
buildPythonPackage rec {
pname = "pybigwig";
version = "0.3.22";
format = "setuptools";
disabled = pythonOlder "3.7";
src = fetchFromGitHub {
owner = "deeptools";
repo = "pyBigWig";
rev = "refs/tags/${version}";
hash = "sha256-wJC5eXIC9PNlbCtmq671WuoIJVkh3aX7K6WArJWjyFg=";
};
buildInputs = [
zlib
];
nativeCheckInputs = [
numpy
pytestCheckHook
];
pythonImportsCheck = [
"pyBigWig"
];
pytestFlagsArray = [
"pyBigWigTest/test*.py"
];
disabledTests = [
# Test file is donwloaded from GitHub
"testAll"
"testBigBed"
"testFoo"
"testNumpyValues"
];
meta = with lib; {
description = "File access to bigBed files, and read and write access to bigWig files";
longDescription = ''
A Python extension, written in C, for quick access to bigBed files
and access to and creation of bigWig files. This extension uses
libBigWig for local and remote file access.
'';
homepage = "https://github.com/deeptools/pyBigWig";
changelog = "https://github.com/deeptools/pyBigWig/releases/tag/${version}";
license = licenses.mit;
maintainers = with maintainers; [ scalavision ];
};
}
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