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{ buildPythonPackage
, lib
, fetchPypi
, setuptools
, formulaic
, click
, num2words
, numpy
, scipy
, pandas
, nibabel
, bids-validator
, sqlalchemy
, pytestCheckHook
, versioneer
, pythonRelaxDepsHook
}:
buildPythonPackage rec {
pname = "pybids";
version = "0.16.4";
pyproject = true;
src = fetchPypi {
inherit pname version;
hash = "sha256-pahl8wi6Sf8AuVqkvi7H90ViHr+9utb14ZVmKK3rFm4=";
};
pythonRelaxDeps = [
"formulaic"
"sqlalchemy"
];
nativeBuildInputs = [
pythonRelaxDepsHook
setuptools
versioneer
] ++ versioneer.optional-dependencies.toml;
propagatedBuildInputs = [
bids-validator
click
formulaic
nibabel
num2words
numpy
pandas
scipy
sqlalchemy
];
pythonImportsCheck = [
"bids"
];
nativeCheckInputs = [
pytestCheckHook
];
disabledTests = [
# looks for missing data:
"test_config_filename"
# regression associated with formulaic >= 0.6.0
# (see https://github.com/bids-standard/pybids/issues/1000)
"test_split"
];
meta = with lib; {
description = "Python tools for querying and manipulating BIDS datasets";
mainProgram = "pybids";
homepage = "https://github.com/bids-standard/pybids";
changelog = "https://github.com/bids-standard/pybids/blob/${version}/CHANGELOG.rst";
license = licenses.mit;
maintainers = with maintainers; [ jonringer ];
};
}
|