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{ buildPythonPackage
, lib
, fetchPypi
, fetchpatch
, formulaic
, click
, num2words
, numpy
, scipy
, pandas
, nibabel
, patsy
, bids-validator
, sqlalchemy
, pytestCheckHook
, versioneer
, pythonRelaxDepsHook
}:
buildPythonPackage rec {
version = "0.16.3";
pname = "pybids";
src = fetchPypi {
inherit pname version;
hash = "sha256-EOJ5NQyNFMpgLA1EaaXkv3/zk+hkPIMaVGrnNba4LMM=";
};
nativeBuildInputs = [ pythonRelaxDepsHook ];
pythonRelaxDeps = [ "sqlalchemy" ];
propagatedBuildInputs = [
click
formulaic
num2words
numpy
scipy
pandas
nibabel
patsy
bids-validator
sqlalchemy
versioneer
];
nativeCheckInputs = [ pytestCheckHook ];
pythonImportsCheck = [ "bids" ];
# looks for missing data:
disabledTests = [ "test_config_filename" ];
meta = with lib; {
description = "Python tools for querying and manipulating BIDS datasets";
homepage = "https://github.com/bids-standard/pybids";
license = licenses.mit;
maintainers = with maintainers; [ jonringer ];
};
}
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