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{ lib
, stdenv
, buildPythonPackage
, fetchFromGitHub
, cython
, gcc
, click
, pytestCheckHook
, pythonOlder
}:
buildPythonPackage rec {
pname = "primer3";
version = "2.0.2";
format = "setuptools";
disabled = pythonOlder "3.7";
src = fetchFromGitHub {
owner = "libnano";
repo = "primer3-py";
rev = "refs/tags/v${version}";
hash = "sha256-v3y9nJpWc9lBKcPX/qjuezjfK0nzKIMiE0QdoLgyNj8=";
};
nativeBuildInputs = [
cython
] ++ lib.optionals stdenv.isDarwin [
gcc
];
nativeCheckInputs = [
click
pytestCheckHook
];
# We are not sure why exactly this is need. It seems `pytestCheckHook`
# doesn't find extension modules installed in $out/${python.sitePackages},
# and the tests rely upon them. This was initially reported upstream at
# https://github.com/libnano/primer3-py/issues/120 and we investigate this
# downstream at: https://github.com/NixOS/nixpkgs/issues/255262.
preCheck = ''
python setup.py build_ext --inplace
'';
pythonImportsCheck = [
"primer3"
];
meta = with lib; {
description = "Oligo analysis and primer design";
homepage = "https://github.com/libnano/primer3-py";
changelog = "https://github.com/libnano/primer3-py/blob/v${version}/CHANGES";
license = with licenses; [ gpl2Only ];
maintainers = with maintainers; [ fab ];
};
}
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