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{ lib
, autograd
, buildPythonPackage
, fetchFromGitHub
, cupy
, cvxopt
, cython
, oldest-supported-numpy
, matplotlib
, numpy
, tensorflow
, pymanopt
, pytestCheckHook
, pythonOlder
, scikit-learn
, scipy
, enableDimensionalityReduction ? false
, enableGPU ? false
}:
buildPythonPackage rec {
pname = "pot";
version = "0.9.2";
pyproject = true;
disabled = pythonOlder "3.6";
src = fetchFromGitHub {
owner = "PythonOT";
repo = "POT";
rev = "refs/tags/${version}";
hash = "sha256-sq8jIWC2DD0T6675W4THbNethm7a//U8HuccKuK0Hjo=";
};
nativeBuildInputs = [
cython
oldest-supported-numpy
];
propagatedBuildInputs = [
numpy
scipy
] ++ lib.optionals enableGPU [
cupy
] ++ lib.optionals enableDimensionalityReduction [
autograd
pymanopt
];
nativeCheckInputs = [
cvxopt
matplotlib
numpy
tensorflow
scikit-learn
pytestCheckHook
];
postPatch = ''
substituteInPlace setup.cfg \
--replace " --cov-report= --cov=ot" "" \
--replace " --durations=20" "" \
--replace " --junit-xml=junit-results.xml" ""
# we don't need setup.py to find the macos sdk for us
sed -i '/sdk_path/d' setup.py
'';
# need to run the tests with the built package next to the test directory
preCheck = ''
pushd build/lib.*
ln -s -t . "$OLDPWD/test"
'';
postCheck = ''
popd
'';
disabledTests = [
# GPU tests are always skipped because of sandboxing
"warnings"
# Fixture is not available
"test_conditional_gradient"
"test_convert_between_backends"
"test_emd_backends"
"test_emd_emd2_types_devices"
"test_emd1d_type_devices"
"test_emd2_backends"
"test_factored_ot_backends"
"test_free_support_barycenter_backends"
"test_func_backends"
"test_generalized_conditional_gradient"
"test_line_search_armijo"
"test_loss_dual"
"test_max_sliced_backend"
"test_plan_dual"
"test_random_backends"
"test_sliced_backend"
"test_to_numpy"
"test_wasserstein_1d_type_devices"
"test_wasserstein"
"test_weak_ot_bakends"
# TypeError: Only integers, slices...
"test_emd1d_device_tf"
];
disabledTestPaths = lib.optionals (!enableDimensionalityReduction) [
"test/test_dr.py"
];
pythonImportsCheck = [
"ot"
"ot.lp"
];
meta = with lib; {
description = "Python Optimal Transport Library";
homepage = "https://pythonot.github.io/";
license = licenses.mit;
maintainers = with maintainers; [ yl3dy ];
};
}
|