1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
|
{ lib
, fetchPypi
, python
, buildPythonPackage
, gfortran
, pytest
, blas
, lapack
, writeTextFile
, isPyPy
, cython
, setuptoolsBuildHook
}:
assert (!blas.isILP64) && (!lapack.isILP64);
let
cfg = writeTextFile {
name = "site.cfg";
text = (lib.generators.toINI {} {
${blas.implementation} = {
include_dirs = "${lib.getDev blas}/include:${lib.getDev lapack}/include";
library_dirs = "${blas}/lib:${lapack}/lib";
libraries = "lapack,lapacke,blas,cblas";
};
lapack = {
include_dirs = "${lib.getDev lapack}/include";
library_dirs = "${lapack}/lib";
};
blas = {
include_dirs = "${lib.getDev blas}/include";
library_dirs = "${blas}/lib";
};
});
};
in buildPythonPackage rec {
pname = "numpy";
version = "1.18.4";
format = "pyproject.toml";
src = fetchPypi {
inherit pname version;
extension = "zip";
sha256 = "bbcc85aaf4cd84ba057decaead058f43191cc0e30d6bc5d44fe336dc3d3f4509";
};
nativeBuildInputs = [ gfortran pytest cython setuptoolsBuildHook ];
buildInputs = [ blas lapack ];
patches = lib.optionals python.hasDistutilsCxxPatch [
# We patch cpython/distutils to fix https://bugs.python.org/issue1222585
# Patching of numpy.distutils is needed to prevent it from undoing the
# patch to distutils.
./numpy-distutils-C++.patch
];
preConfigure = ''
sed -i 's/-faltivec//' numpy/distutils/system_info.py
export NPY_NUM_BUILD_JOBS=$NIX_BUILD_CORES
'';
preBuild = ''
ln -s ${cfg} site.cfg
'';
enableParallelBuilding = true;
doCheck = !isPyPy; # numpy 1.16+ hits a bug in pypy's ctypes, using either numpy or pypy HEAD fixes this (https://github.com/numpy/numpy/issues/13807)
checkPhase = ''
runHook preCheck
pushd dist
${python.interpreter} -c 'import numpy; numpy.test("fast", verbose=10)'
popd
runHook postCheck
'';
passthru = {
# just for backwards compatibility
blas = blas.provider;
blasImplementation = blas.implementation;
inherit cfg;
};
# Disable test
# - test_large_file_support: takes a long time and can cause the machine to run out of disk space
NOSE_EXCLUDE="test_large_file_support";
meta = {
description = "Scientific tools for Python";
homepage = "https://numpy.org/";
maintainers = with lib.maintainers; [ fridh ];
};
}
|