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{ lib
, buildPythonPackage
, fetchPypi
, pythonOlder
, cython
, nose
, matplotlib
, nibabel
, numpy
, scipy
, sympy
, python
}:
buildPythonPackage rec {
version = "0.5.0";
format = "setuptools";
pname = "nipy";
disabled = pythonOlder "2.6";
src = fetchPypi {
inherit pname version;
sha256 = "a8a2c97ce854fece4aced5a6394b9fdca5846150ad6d2a36b86590924af3c848";
};
nativeBuildInputs = [ cython ];
buildInputs = lib.optionals doCheck [ nose ];
propagatedBuildInputs = [ matplotlib nibabel numpy scipy sympy ];
preBuild = ''
make recythonize
'';
checkPhase = '' # wants to be run in a different directory
mkdir nosetests
cd nosetests
${python.interpreter} -c "import nipy; nipy.test()"
rm -rf .
'';
# failing test:
# nipy.algorithms.statistics.models.tests.test_olsR.test_results(11.593139639404727, 11.593140144880794, 6) # disagrees by 1 at 6th decimal place
# erroring tests:
# nipy.modalities.fmri.fmristat.tests.test_FIAC.test_altprotocol
# nipy.modalities.fmri.fmristat.tests.test_FIAC.test_agreement
# nipy.tests.test_scripts.test_nipy_4d_realign # because `nipy_4d_realign` script isn't found at test time; works from nix-shell, so could be patched
# nipy.tests.test_scripts.test_nipy_3_4d # ditto re.: `nipy_3_4d` script
doCheck = false;
meta = with lib; {
homepage = "https://nipy.org/nipy";
description = "Software for structural and functional neuroimaging analysis";
license = licenses.bsd3;
};
}
|