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{ lib
, buildPythonPackage
, fetchFromGitHub
, pythonOlder
, pytestCheckHook
, numpy
, pillow
, pillow-jpls
, pydicom
, pylibjpeg
, pylibjpeg-libjpeg
}:
let
test_data = fetchFromGitHub {
owner = "pydicom";
repo = "pydicom-data";
rev = "cbb9b2148bccf0f550e3758c07aca3d0e328e768";
hash = "sha256-nF/j7pfcEpWHjjsqqTtIkW8hCEbuQ3J4IxpRk0qc1CQ=";
};
in
buildPythonPackage rec {
pname = "highdicom";
version = "0.22.0";
pyproject = true;
disabled = pythonOlder "3.6";
src = fetchFromGitHub {
owner = "MGHComputationalPathology";
repo = "highdicom";
rev = "refs/tags/v${version}";
hash = "sha256-KHSJWEnm8u0xHkeeLF/U7MY4FfiWb6Q0GQQy2w1mnKw=";
};
propagatedBuildInputs = [
numpy
pillow
pillow-jpls
pydicom
];
passthru.optional-dependencies = {
libjpeg = [
pylibjpeg
pylibjpeg-libjpeg
#pylibjpeg-openjpeg # not in nixpkgs yet
];
};
nativeCheckInputs = [
pytestCheckHook
] ++ passthru.optional-dependencies.libjpeg;
preCheck = ''
export HOME=$TMP/test-home
mkdir -p $HOME/.pydicom/
ln -s ${test_data}/data_store/data $HOME/.pydicom/data
'';
pythonImportsCheck = [
"highdicom"
"highdicom.legacy"
"highdicom.ann"
"highdicom.ko"
"highdicom.pm"
"highdicom.pr"
"highdicom.seg"
"highdicom.sr"
"highdicom.sc"
];
meta = with lib; {
description = "High-level DICOM abstractions for Python";
homepage = "https://highdicom.readthedocs.io";
changelog = "https://github.com/ImagingDataCommons/highdicom/releases/tag/v${version}";
license = licenses.mit;
maintainers = with maintainers; [ bcdarwin ];
};
}
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