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{ lib
, buildPythonPackage
, fetchFromGitHub
, pythonOlder
, pytestCheckHook
, gdcm
, nibabel
, numpy
, pydicom
, scipy
, setuptools
}:
buildPythonPackage rec {
pname = "dicom2nifti";
version = "2.4.8";
format = "setuptools";
disabled = pythonOlder "3.6";
# no tests in PyPI dist
src = fetchFromGitHub {
owner = "icometrix";
repo = pname;
rev = version;
hash = "sha256-2Pspxdeu3pHwXpbjS6bQQnvdeMuITRwYarPuLlmNcv8";
};
propagatedBuildInputs = [ gdcm nibabel numpy pydicom scipy setuptools ];
# python-gdcm just builds the python interface provided by the "gdcm" package, so
# we should be able to replace "python-gdcm" with "gdcm" but this doesn't work
# (similar to https://github.com/NixOS/nixpkgs/issues/84774)
postPatch = ''
substituteInPlace setup.py --replace "python-gdcm" ""
substituteInPlace tests/test_generic.py --replace "from common" "from dicom2nifti.common"
'';
nativeCheckInputs = [ pytestCheckHook ];
pythonImportsCheck = [ "dicom2nifti" ];
meta = with lib; {
homepage = "https://github.com/icometrix/dicom2nifti";
description = "Library for converting dicom files to nifti";
license = licenses.mit;
maintainers = with maintainers; [ bcdarwin ];
};
}
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