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{ lib
, buildPythonPackage
, pythonOlder
, fetchFromGitHub
, pytestCheckHook
, future
, numpy
, pillow
, scipy
, scikit-learn
, scikit-image
, threadpoolctl
}:
buildPythonPackage rec {
pname = "batchgenerators";
version = "0.25";
format = "setuptools";
disabled = pythonOlder "3.7";
src = fetchFromGitHub {
owner = "MIC-DKFZ";
repo = pname;
rev = "v${version}";
hash = "sha256-L2mWH2t8PN9o1M67KDdl1Tj2ZZ02MY4icsJY2VNrj3A=";
};
propagatedBuildInputs = [
future
numpy
pillow
scipy
scikit-learn
scikit-image
threadpoolctl
];
# see https://github.com/MIC-DKFZ/batchgenerators/pull/78
postPatch = ''
substituteInPlace setup.py \
--replace '"unittest2",' ""
'';
nativeCheckInputs = [
pytestCheckHook
];
# see https://github.com/MIC-DKFZ/batchgenerators/pull/78
disabledTestPaths = [ "tests/test_axis_mirroring.py" ];
pythonImportsCheck = [
"batchgenerators"
"batchgenerators.augmentations"
"batchgenerators.dataloading"
"batchgenerators.datasets"
"batchgenerators.transforms"
"batchgenerators.utilities"
];
meta = with lib; {
description = "2D and 3D image data augmentation for deep learning";
homepage = "https://github.com/MIC-DKFZ/batchgenerators";
license = licenses.asl20;
maintainers = with maintainers; [ bcdarwin ];
};
}
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