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{ lib
, stdenv
, fetchFromGitHub
, cmake
, zlib
, lz4
, bzip2
, zstd
, spdlog
, tbb
, openssl
, boost
, libpqxx
, clang-tools
, catch2_3
, python3
, gtest
, doxygen
, fixDarwinDylibNames
, useAVX2 ? stdenv.hostPlatform.avx2Support
}:
let
# pre-fetch ExternalProject from cmake/Modules/FindMagic_EP.cmake
ep-file-windows = fetchFromGitHub {
owner = "TileDB-Inc";
repo = "file-windows";
rev = "5.38.2.tiledb";
hash = "sha256-TFn30VCuWZr252VN1T5NNCZe2VEN3xQSomS7XxxKGF8=";
fetchSubmodules = true;
};
in
stdenv.mkDerivation rec {
pname = "tiledb";
version = "2.18.2";
src = fetchFromGitHub {
owner = "TileDB-Inc";
repo = "TileDB";
rev = version;
hash = "sha256-uLiXhigYz3v7NgY38twot3sBHxZS5QCrOiPfME4wWzE=";
};
patches = [
./FindMagic_EP.cmake.patch
];
postPatch = ''
# copy pre-fetched external project to directory where it is expected to be
mkdir -p build/externals/src
cp -a ${ep-file-windows} build/externals/src/ep_magic
chmod -R u+w build/externals/src/ep_magic
# add openssl on path
sed -i '49i list(APPEND OPENSSL_PATHS "${openssl.dev}" "${openssl.out}")' \
cmake/Modules/FindOpenSSL_EP.cmake
'';
# upstream will hopefully fix this in some newer release
env.CXXFLAGS = "-include random";
# (bundled) blosc headers have a warning on some archs that it will be using
# unaccelerated routines.
cmakeFlags = [
"-DTILEDB_VCPKG=OFF"
"-DTILEDB_WEBP=OFF"
"-DTILEDB_WERROR=OFF"
] ++ lib.optional (!useAVX2) "-DCOMPILER_SUPPORTS_AVX2=FALSE";
nativeBuildInputs = [
ep-file-windows
catch2_3
clang-tools
cmake
python3
doxygen
] ++ lib.optional stdenv.hostPlatform.isDarwin fixDarwinDylibNames;
nativeCheckInputs = [
gtest
];
buildInputs = [
zlib
lz4
bzip2
zstd
spdlog
tbb
openssl
boost
libpqxx
];
# test commands taken from
# https://github.com/TileDB-Inc/TileDB/blob/dev/.github/workflows/unit-test-runs.yml
checkPhase = ''
runHook preCheck
make -C tiledb tests -j$NIX_BUILD_CORES
make -C tiledb test ARGS="-R '^unit_'" -R "test_assert"
make -C tiledb test ARGS="-R 'test_ci_asserts'"
runHook postCheck
'';
doCheck = true;
installTargets = [ "install-tiledb" "doc" ];
postInstall = lib.optionalString stdenv.isDarwin ''
install_name_tool -add_rpath ${tbb}/lib $out/lib/libtiledb.dylib
'';
meta = with lib; {
description = "TileDB allows you to manage the massive dense and sparse multi-dimensional array data";
homepage = "https://github.com/TileDB-Inc/TileDB";
license = licenses.mit;
platforms = platforms.unix;
maintainers = with maintainers; [ rakesh4g ];
};
}
|