blob: ce39285e0d239c0e38061ca7fa41634a8064f47c (
plain) (
blame)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
|
{ stdenv, fetchFromGitHub, cmake, zlib, netcdf, nifticlib, hdf5 }:
stdenv.mkDerivation rec {
pname = "libminc";
version = "unstable-2020-07-17";
owner = "BIC-MNI";
src = fetchFromGitHub {
inherit owner;
repo = pname;
rev = "ffb5fb234a852ea7e8da8bb2b3b49f67acbe56ca";
sha256 = "0yr4ksghpvxh9zg0a4p7hvln3qirsi08plvjp5kxx2qiyj96zsdm";
};
postPatch = ''
patchShebangs .
'';
nativeBuildInputs = [ cmake ];
buildInputs = [ zlib nifticlib ];
propagatedBuildInputs = [ netcdf hdf5 ];
cmakeFlags = [
"-DLIBMINC_MINC1_SUPPORT=ON"
"-DLIBMINC_BUILD_SHARED_LIBS=ON"
"-DLIBMINC_USE_SYSTEM_NIFTI=ON"
];
doCheck = !stdenv.isDarwin;
checkPhase = ''
export LD_LIBRARY_PATH="$(pwd)" # see #22060
ctest -j1 -E 'ezminc_rw_test' --output-on-failure
# -j1: see https://github.com/BIC-MNI/libminc/issues/110
# ezminc_rw_test: can't find libminc_io.so.5.2.0
'';
meta = with stdenv.lib; {
homepage = "https://github.com/BIC-MNI/libminc";
description = "Medical imaging library based on HDF5";
maintainers = with maintainers; [ bcdarwin ];
platforms = platforms.unix;
license = licenses.free;
};
}
|