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{ lib, stdenv, fetchFromGitHub, fetchpatch, fetchurl }:
stdenv.mkDerivation rec {
pname = "whisper";
version = "2.0.1";
src = fetchFromGitHub {
owner = "refresh-bio";
repo = pname;
rev = "v${version}";
sha256 = "0wpx1w1mar2d6zq2v14vy6nn896ds1n3zshxhhrrj5d528504iyw";
};
patches = [
# gcc-13 compatibility fixes:
# https://github.com/refresh-bio/Whisper/pull/17
(fetchpatch {
name = "gcc-13.patch";
url = "https://github.com/refresh-bio/Whisper/commit/d67e110dd6899782e4687188f6b432494315b0b4.patch";
hash = "sha256-Z8GrkUMIKO/ccEdwulQh+WUox3CEckr6NgoBSzYvfuw=";
})
];
preConfigure = ''
cd src
# disable default static linking
sed -i 's/ -static / /' makefile
'';
enableParallelBuilding = true;
installPhase = ''
runHook preInstall
install -Dt $out/bin whisper whisper-index
runHook postInstall
'';
meta = with lib; {
broken = stdenv.isDarwin;
description = "Short read sequence mapper";
license = licenses.gpl3;
homepage = "https://github.com/refresh-bio/whisper";
maintainers = with maintainers; [ jbedo ];
platforms = platforms.x86_64;
};
}
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