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{ stdenv
, lib
, fetchurl
, autoPatchelfHook
, libidn
, zlib
, bzip2
}:
let
libidn11 = libidn.overrideAttrs (old: {
pname = "libidn";
version = "1.34";
src = fetchurl {
url = "mirror://gnu/libidn/libidn-1.34.tar.gz";
sha256 = "0g3fzypp0xjcgr90c5cyj57apx1cmy0c6y9lvw2qdcigbyby469p";
};
});
in
stdenv.mkDerivation rec {
pname = "sratoolkit";
version = "2.11.3";
src = fetchurl {
url = "https://ftp-trace.ncbi.nlm.nih.gov/sra/sdk/${version}/sratoolkit.${version}-ubuntu64.tar.gz";
sha256 = "1590lc4cplxr3lhjqci8fjncy67imn2h14qd2l87chmhjh243qvx";
};
nativeBuildInputs = [
autoPatchelfHook
];
buildInputs = [
libidn11
zlib
bzip2
stdenv.cc.cc.lib
];
sourceRoot = "sratoolkit.${version}-ubuntu64/bin";
installPhase = ''
find -L . -executable -type f -! -name "*remote-fuser*" -exec install -m755 -D {} $out/bin/{} \;
'';
meta = with lib; {
homepage = "https://github.com/ncbi/sra-tools";
description = "The SRA Toolkit and SDK from NCBI is a collection of tools and libraries for using data in the INSDC Sequence Read Archives.";
license = licenses.publicDomain;
maintainers = with maintainers; [ thyol ];
platforms = [ "x86_64-linux" ];
};
}
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