blob: 5c7353af9315c0357ff2b471f76f556435284fe2 (
plain) (
blame)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
|
{ stdenv
, fetchFromGitHub
, pkgs
, mpi ? false
}:
stdenv.mkDerivation rec {
pname = "RAxML";
version = "8.2.12";
src = fetchFromGitHub {
owner = "stamatak";
repo = "standard-${pname}";
rev = "v${version}";
sha256 = "1jqjzhch0rips0vp04prvb8vmc20c5pdmsqn8knadcf91yy859fh";
};
buildInputs = if mpi then [ pkgs.openmpi ] else [];
# TODO darwin, AVX and AVX2 makefile targets
buildPhase = if mpi then ''
make -f Makefile.MPI.gcc
'' else ''
make -f Makefile.SSE3.PTHREADS.gcc
'';
installPhase = if mpi then ''
mkdir -p $out/bin && cp raxmlHPC-MPI $out/bin
'' else ''
mkdir -p $out/bin && cp raxmlHPC-PTHREADS-SSE3 $out/bin
'';
meta = with stdenv.lib; {
description = "A tool for Phylogenetic Analysis and Post-Analysis of Large Phylogenies";
license = licenses.gpl3;
homepage = "https://sco.h-its.org/exelixis/web/software/raxml/";
maintainers = [ maintainers.unode ];
platforms = [ "i686-linux" "x86_64-linux" ];
};
}
|