blob: 18acee7a5f141b32b9c53e116ac6a343345b4ddf (
plain) (
blame)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
|
{ lib
, stdenv
, fetchFromGitHub
, cmake
, xxd
, perl
, installShellFiles
, enableAvx2 ? stdenv.hostPlatform.avx2Support
, enableSse4_1 ? stdenv.hostPlatform.sse4_1Support
, enableMpi ? false
, mpi
, openmp
, zlib
, bzip2
}:
stdenv.mkDerivation rec {
pname = "mmseqs2";
version = "15-6f452";
src = fetchFromGitHub {
owner = "soedinglab";
repo = pname;
rev = version;
sha256 = "sha256-L+zOWrGkCLz/wqpBuji8H4/93sDFpcfnDOE8FHq1j84=";
};
nativeBuildInputs = [ cmake xxd perl installShellFiles ];
cmakeFlags =
lib.optional enableAvx2 "-DHAVE_AVX2=1"
++ lib.optional enableSse4_1 "-DHAVE_SSE4_1=1"
++ lib.optional enableMpi "-DHAVE_MPI=1";
buildInputs =
lib.optionals stdenv.cc.isClang [ openmp zlib bzip2 ]
++ lib.optional enableMpi mpi;
postInstall = ''
installShellCompletion --bash --cmd mmseqs $out/util/bash-completion.sh
rm -r $out/util/
'';
meta = with lib; {
description = "Ultra fast and sensitive sequence search and clustering suite";
mainProgram = "mmseqs";
homepage = "https://mmseqs.com/";
license = licenses.gpl3;
maintainers = with maintainers; [ natsukium ];
platforms = platforms.unix;
};
}
|