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{ lib, python3, fetchpatch, fetchPypi }:
python3.pkgs.buildPythonPackage rec {
pname = "macs2";
version = "2.2.9.1";
format = "pyproject";
src = fetchPypi {
pname = lib.toUpper pname;
inherit version;
hash = "sha256-jVa8N/uCP8Y4fXgTjOloQFxUoKjNl3ZoJwX9CYMlLRY=";
};
patches = [
# https://github.com/macs3-project/MACS/pull/590
(fetchpatch {
name = "remove-pip-build-dependency.patch";
url = "https://github.com/macs3-project/MACS/commit/cf95a930daccf9f16e5b9a9224c5a2670cf67939.patch";
hash = "sha256-WB3Ubqk5fKtZt97QYo/sZDU/yya9MUo1NL4VsKXR+Yo=";
})
];
nativeBuildInputs = with python3.pkgs; [
cython
numpy
setuptools
wheel
];
propagatedBuildInputs = with python3.pkgs; [
numpy
];
__darwinAllowLocalNetworking = true;
nativeCheckInputs = with python3.pkgs; [
unittestCheckHook
];
unittestFlagsArray = [
"-s"
"test"
];
pythonImportsCheck = [ "MACS2" ];
meta = with lib; {
description = "Model-based Analysis for ChIP-Seq";
mainProgram = "macs2";
homepage = "https://github.com/macs3-project/MACS/";
changelog = "https://github.com/macs3-project/MACS/releases/tag/v${version}";
license = licenses.bsd3;
maintainers = with maintainers; [ gschwartz ];
};
}
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