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{ lib, stdenv, fetchFromGitHub, autoconf, cmake, hdf5, zlib }:
stdenv.mkDerivation rec {
pname = "kallisto";
version = "0.50.1";
src = fetchFromGitHub {
repo = "kallisto";
owner = "pachterlab";
rev = "v${version}";
sha256 = "sha256-JJZJOl4u6FzngrrMuC2AfD5ry2LBOT8tdz2piH+9LFE=";
};
nativeBuildInputs = [ autoconf cmake ];
buildInputs = [ hdf5 zlib ];
cmakeFlags = [ "-DUSE_HDF5=ON" ];
# Parallel build fails in some cases: https://github.com/pachterlab/kallisto/issues/160
enableParallelBuilding = false;
meta = with lib; {
description = "Program for quantifying abundances of transcripts from RNA-Seq data";
homepage = "https://pachterlab.github.io/kallisto";
license = licenses.bsd2;
platforms = platforms.linux;
maintainers = with maintainers; [ arcadio ];
};
}
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