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{ lib, stdenv, fetchzip, jdk17, testers, wrapGAppsHook, igv }:
stdenv.mkDerivation rec {
pname = "igv";
version = "2.17.3";
src = fetchzip {
url = "https://data.broadinstitute.org/igv/projects/downloads/${lib.versions.majorMinor version}/IGV_${version}.zip";
sha256 = "sha256-SGqkWBv4nol0+lnGN7wBHJvndcIqZ5+Wt1wAcXA42cU=";
};
installPhase = ''
mkdir -pv $out/{share,bin}
cp -Rv * $out/share/
sed -i "s#prefix=.*#prefix=$out/share#g" $out/share/igv.sh
sed -i 's#java#${jdk17}/bin/java#g' $out/share/igv.sh
sed -i "s#prefix=.*#prefix=$out/share#g" $out/share/igvtools
sed -i 's#java#${jdk17}/bin/java#g' $out/share/igvtools
ln -s $out/share/igv.sh $out/bin/igv
ln -s $out/share/igvtools $out/bin/igvtools
chmod +x $out/bin/igv
chmod +x $out/bin/igvtools
'';
nativeBuildInputs = [ wrapGAppsHook ];
passthru.tests.version = testers.testVersion {
package = igv;
};
meta = with lib; {
homepage = "https://www.broadinstitute.org/igv/";
description = "A visualization tool for interactive exploration of genomic datasets";
license = licenses.mit;
platforms = platforms.unix;
maintainers = [ maintainers.mimame ];
};
}
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