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{ lib
, stdenv
, fetchFromGitHub
, cmake
, gtest
, which
}:
stdenv.mkDerivation rec {
pname = "genmap";
version = "1.3.0";
src = fetchFromGitHub {
owner = "cpockrandt";
repo = "genmap";
rev = "genmap-v${version}";
fetchSubmodules = true;
sha256 = "sha256-7sIKBRMNzyCrZ/c2nXkknb6a5YsXe6DRE2IFhp6AviY=";
};
nativeBuildInputs = [ cmake ];
doCheck = true;
patches = [ ./gtest.patch ];
nativeCheckInputs = [ gtest which ];
preCheck = "make genmap_algo_test";
# disable benchmarks
preConfigure = ''
echo > benchmarks/CMakeLists.txt
'';
meta = {
description = "Ultra-fast computation of genome mappability";
mainProgram = "genmap";
license = lib.licenses.bsd3;
homepage = "https://github.com/cpockrandt/genmap";
maintainers = with lib.maintainers; [ jbedo ];
platforms = lib.platforms.unix;
};
}
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