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{ lib
, autoPatchelfHook
, fetchFromGitHub
, python3Packages
, wget
, zlib
}:
python3Packages.buildPythonApplication rec {
pname = "eggnog-mapper";
version = "2.1.7";
src = fetchFromGitHub {
owner = "eggnogdb";
repo = pname;
rev = version;
hash = "sha256-auVD/r8m3TAB1KYMQ7Sae23eDg6LRx/daae0505cjwU=";
};
postPatch = ''
# Not a great solution...
substituteInPlace setup.cfg \
--replace "==" ">="
'';
nativeBuildInputs = [
autoPatchelfHook
];
buildInputs = [
zlib
];
propagatedBuildInputs = [
wget
] ++ (with python3Packages; [
biopython
psutil
XlsxWriter
]);
# Tests rely on some of the databases being available, which is not bundled
# with this package as (1) in total, they represent >100GB of data, and (2)
# the user can download only those that interest them.
doCheck = false;
meta = with lib; {
description = "Fast genome-wide functional annotation through orthology assignment";
license = licenses.gpl2;
homepage = "https://github.com/eggnogdb/eggnog-mapper/wiki";
maintainers = with maintainers; [ luispedro ];
platforms = platforms.all;
};
}
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