blob: 2e744c7b2b9ee0265b63f683bdc34d678847d540 (
plain) (
blame)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
|
{ stdenv, fetchurl, gcc, zlib, python27 }:
stdenv.mkDerivation rec {
name = "ecopcr-0.8.0";
src = fetchurl {
url = "https://git.metabarcoding.org/obitools/ecopcr/uploads/6f37991b325c8c171df7e79e6ae8d080/${name}.tar.gz";
sha256 = "10c58hj25z78jh0g3zcbx4890yd2qrvaaanyx8mn9p49mmyf5pk6";
};
sourceRoot = "ecoPCR/src";
buildInputs = [ gcc python27 zlib ];
installPhase = ''
mkdir -p $out/bin
cp -v ecoPCR $out/bin
cp -v ecogrep $out/bin
cp -v ecofind $out/bin
cp -v ../tools/ecoPCRFormat.py $out/bin/ecoPCRFormat
chmod a+x $out/bin/ecoPCRFormat
'';
meta = with stdenv.lib; {
description = "Electronic PCR software tool";
longDescription = ''
ecoPCR is an electronic PCR software developed by the LECA. It
helps you estimate Barcode primers quality. In conjunction with
OBITools, you can postprocess ecoPCR output to compute barcode
coverage and barcode specificity. New barcode primers can be
developed using the ecoPrimers software.
'';
homepage = "https://git.metabarcoding.org/obitools/ecopcr/wikis/home";
license = licenses.cecill20;
maintainers = [ maintainers.metabar ];
};
}
|