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{ lib, stdenv, fetchFromGitHub, cmake, zlib }:
stdenv.mkDerivation rec {
pname = "diamond";
version = "2.1.9";
src = fetchFromGitHub {
owner = "bbuchfink";
repo = "diamond";
rev = "v${version}";
sha256 = "sha256-cTg9TEpz3FSgX2tpfU4y55cCgFY5+mQY86FziHAwd+s=";
};
nativeBuildInputs = [ cmake ];
buildInputs = [ zlib ];
meta = with lib; {
description = "Accelerated BLAST compatible local sequence aligner";
longDescription = ''
DIAMOND is a sequence aligner for protein and translated DNA searches, designed for high performance analysis of big sequence data. The key features are:
- Pairwise alignment of proteins and translated DNA at 100x-10,000x speed of BLAST.
- Frameshift alignments for long read analysis.
- Low resource requirements and suitable for running on standard desktops or laptops.
- Various output formats, including BLAST pairwise, tabular and XML, as well as taxonomic classification.
When using the tool in published research, please cite:
- Buchfink B, Reuter K, Drost HG, "Sensitive protein alignments at tree-of-life scale using DIAMOND", Nature Methods 18, 366–368 (2021). doi:10.1038/s41592-021-01101-x
'';
homepage = "https://github.com/bbuchfink/diamond";
license = lib.licenses.gpl3Plus;
maintainers = with lib.maintainers; [ thyol ];
};
}
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