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{ lib
, stdenv
, bzip2
, cmake
, fetchurl
, fftw
, llvmPackages
, zlib
}:
stdenv.mkDerivation (finalAttrs: {
pname = "cmtk";
version = "3.3.2";
src = fetchurl {
name = "cmtk-source.tar.gz";
url = "https://www.nitrc.org/frs/download.php/13188/CMTK-${finalAttrs.version}-Source.tar.gz//?i_agree=1&download_now=1";
hash = "sha256-iE164NCOSOypZLLZfZy9RTyrS+YnY9ECqfb4QhlsMS4=";
};
nativeBuildInputs = [ cmake ];
buildInputs = [
bzip2
fftw
zlib
] ++ lib.optionals stdenv.cc.isClang [
llvmPackages.openmp
];
env.NIX_CFLAGS_COMPILE = toString [
(lib.optionalString stdenv.cc.isGNU "-std=c++11")
(lib.optionalString stdenv.cc.isClang "-Wno-error=c++11-narrowing")
(lib.optionalString (stdenv.isDarwin && stdenv.isAarch64) "-Dfinite=isfinite")
];
meta = with lib; {
description = "Computational Morphometry Toolkit";
mainProgram = "cmtk";
longDescription = ''A software toolkit for computational morphometry of
biomedical images, CMTK comprises a set of command line tools and a
back-end general-purpose library for processing and I/O'';
maintainers = with maintainers; [ tbenst ];
platforms = platforms.all;
license = licenses.gpl3Plus;
homepage = "https://www.nitrc.org/projects/cmtk/";
};
})
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