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{ lib
, stdenv
, fetchFromGitHub
, fetchpatch
, htslib
, zlib
, bzip2
, xz
, curl
, openssl
}:
stdenv.mkDerivation rec {
pname = "angsd";
version = "0.940";
src = fetchFromGitHub {
owner = "ANGSD";
repo = "angsd";
sha256 = "sha256-Ppxgy54pAnqJUzNX5c12NHjKTQyEEcPSpCEEVOyZ/LA=";
rev = version;
};
patches = [
# Pull pending inclusion upstream patch for parallel buil fixes:
# https://github.com/ANGSD/angsd/pull/590
(fetchpatch {
name = "parallel-make.patch";
url = "https://github.com/ANGSD/angsd/commit/89fd1d898078016df390e07e25b8a3eeadcedf43.patch";
hash = "sha256-KQgUfr3v8xc+opAm4qcSV2eaupztv4gzJJHyzJBCxqA=";
})
];
buildInputs = [ htslib zlib bzip2 xz curl openssl ];
enableParallelBuilding = true;
makeFlags = [ "HTSSRC=systemwide" "prefix=$(out)" ];
meta = with lib; {
description = "Program for analysing NGS data";
homepage = "http://www.popgen.dk/angsd";
maintainers = [ maintainers.bzizou ];
license = licenses.gpl2;
};
}
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