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* treewide: Add lots of platforms to packages with no metaTuomas Tynkkynen2016-08-02
| | | | Build-tested on x86_64 Linux and on Darwin.
* darwin: R: provide gettext and gfortran as buildInputs on Darwin.Michael Stone2016-07-22
| | | | | | | | | As discussed in #10623, many R modules fail to build on Darwin without the libraries and compilers provided by these packages. For more detail, please see comment: https://github.com/NixOS/nixpkgs/pull/10623#issuecomment-172375342
* jags: 3.4.0 -> 4.1.0 (#16804)Ben Darwin2016-07-18
| | | | | * jags: 3.4.0 -> 4.1.0 * unbreak rjags and dependent packages
* treewide: Make explicit that 'dev' output of openssl is usedTuomas Tynkkynen2016-05-19
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* treewide: Make explicit that 'dev' output of mpfr is usedTuomas Tynkkynen2016-05-19
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* boost: Kill unnecessary 'lib' outputTuomas Tynkkynen2016-04-28
| | | | | This was split in somewhere pre-2014 without the current infra which automates parts of this, in particular the output propagation.
* Merge pull request #14144 from jefdaj/r-bioc-data-packagesPeter Simons2016-04-15
|\ | | | | r-modules: update CRAN, add Bioconductor data packages
| * mark bioc packages broken; should match hydra nowJeffrey David Johnson2016-04-14
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| * mark bioc packages broken; should match hydra nowJeffrey David Johnson2016-04-14
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| * r-modules: mark mzR brokenJeffrey David Johnson2016-04-12
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| * work on fixing up bioconductor packagesJeffrey David Johnson2016-03-31
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| * work on fixing up bioconductor packagesJeffrey David Johnson2016-03-31
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| * work on fixing up bioconductor packagesJeffrey David Johnson2016-03-31
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| * work on fixing up bioconductor packagesJeffrey David Johnson2016-03-27
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| * work on fixing up bioconductor packagesJeffrey David Johnson2016-03-26
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| * work on fixing up bioconductor packagesJeffrey David Johnson2016-03-25
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| * work on fixing up bioconductor packageJeffrey David Johnson2016-03-25
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| * work on fixing up bioconductor packagesJeffrey David Johnson2016-03-24
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| * r-modules: update CRAN, add Bioconductor data pkgsJeffrey David Johnson2016-03-22
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* | Merge master into closure-sizeVladimír Čunát2016-03-08
|\| | | | | | | | | The kde-5 stuff still didn't merge well. I hand-fixed what I saw, but there may be more problems.
| * nixpkgs manual: add basic R documentation, fixes #13362Michel Kuhlmann2016-02-22
| | | | | | | | also fixes #13243
* | Merge recent 'staging' into closure-sizeVladimír Čunát2016-02-03
|\| | | | | | | Let's get rid of those merge conflicts.
| * Remove no longer (or never) referenced patchesTobias Geerinckx-Rice2016-01-24
| | | | | | | | 55 files changed, 6041 deletions. Tested with `nix-build -A tarball`.
* | treewide: Mass replace 'xorg.libXft}/lib' to refer the 'out' outputTuomas Tynkkynen2016-01-24
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* | Merge branch 'staging' into closure-sizeVladimír Čunát2016-01-19
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| * R: fix Darwin buildAsko Soukka2016-01-06
| | | | | | | | Merged manually from https://github.com/NixOS/nixpkgs/pull/10623.
| * r-modules: update list of broken packagesMichel Kuhlmann2016-01-06
| | | | | | | | Closes https://github.com/NixOS/nixpkgs/pull/12181.
| * r-modules: regenerate CRAN packagesMichel Kuhlmann2016-01-04
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* | Merge branch 'master' into closure-sizeVladimír Čunát2015-12-31
|\| | | | | | | | | TODO: there was more significant refactoring of qtbase and plasma 5.5 on master, and I'm deferring pointing to correct outputs to later.
| * r-modules: prefer gsl 1.x since 2.x is unsupported by r-gsl-1.9.xPeter Simons2015-12-29
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* | Merge remote-tracking branch 'origin/master' into closure-sizeLuca Bruno2015-11-25
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| * r-modules: update list of broken packagesPeter Simons2015-11-25
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| * r-modules: regenerate CRAN, BIOC and IRKernelNikolay Amiantov2015-11-25
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| * r-modules: use HTTPS, allow passing args from generated set, use MRANNikolay Amiantov2015-11-25
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| * r-tikzDevice: update to new texlivePeter Simons2015-11-24
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| * r-modules: update list of broken builds to avoid Hydra errorsPeter Simons2015-11-18
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| * R: regenerate CRAN packagesMichel Kuhlmann2015-11-17
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* | Merge staging into closure-sizeVladimír Čunát2015-11-20
|\| | | | | | | | | | | The most complex problems were from dealing with switches reverted in the meantime (gcc5, gmp6, ncurses6). It's likely that darwin is (still) broken nontrivially.
| * r-modules: init IRkernel packagesAsko Soukka2015-10-30
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| * R: fix some modules with configure-shebang-errorMichel Kuhlmann2015-10-12
| | | | | | | | | | | | - xml2: fix configure script - rversion, devtools: mark as unbroken dependency R-curl was fixed in 513e31185bb15a8c2b52149b1f1c2b3fe1740745
| * r-modules: update list of broken packagesPeter Simons2015-10-05
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| * R: regenerate CRAN and BIOC packagesKarn Kallio2015-10-04
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| * R-curl: fix configure scriptNikolay Amiantov2015-10-04
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* | curl: split into multiple outputsVladimír Čunát2015-10-13
| | | | | | | | Also use pkgconfig to be safer and fix (some) referrers.
* | libxml2,libxslt: split into multiple outputsVladimír Čunát2015-10-05
|/ | | | | Fixed all references, hopefully. libxml2Python is slightly hacky now, but it seems to work.
* xlibs: replace occurrences by xorgVladimír Čunát2015-09-15
| | | | | | | This seems to have been confusing people, using both xlibs and xorg, etc. - Avoided renaming local (and different) xlibs binding in gcc*. - Fixed cases where both xorg and xlibs were used. Hopefully everything still works as before.
* x11: replace its usage by xlibsWrapper directlyVladimír Čunát2015-09-15
| | | | | | Scilab note: the parameters already had pointed to nonexistent dirs before this set of refactoring. But that config wasn't even used by default.
* cudatoolkit: don't move $out/include to $out/usr_includeBjørn Forsman2015-09-10
| | | | | | | | | | | | | | | | | | | | This effectively reverts 86c283824f76d849acbe6 ("If cuda headers are presented to nix [...]") and all the following workarounds that was added due to that commit. As far as I can tell[1] this hack isn't needed anymore. And moving includes to $out/usr_include causes pain for cudatoolkit users, so better get rid of it. In patches that did more than the $out/usr_include workaround, I only changed the line back to $out/include instead of re-generating the patches and fully removing the changed line. [1]: I build tested blender and caffe, and temporarily added recurseIntoAttrs to rPackages and haskellPackages so that nox-review could get proper coverage. However, many of the packages do not build even before this patch. I also built CUDA samples with cudatoolkit7 that ran fine.
* R: fix Hydra build & evaluation errorsPeter Simons2015-08-06
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* R: regenerate CRAN and BIOC packagesPeter Simons2015-08-06
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