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* treewide: remove unused variables (#63177)volth2019-06-16
* Merge pull request #58362 from bzizou/cd-hitAaron Andersen2019-06-13
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| * cd-hit: init at 4.8.1Bruno Bzeznik2019-06-13
* | pythonPackages.neuron: restrict to x86 platformsRobert Scott2019-06-09
* | pythonPackages.neuron: fix for darwinRobert Scott2019-06-09
* | star: 2.7.0f -> 2.7.1a (#62577)R. RyanTM2019-06-06
* | Merge pull request #62752 from matthewbauer/darwin-fixes100Matthew Bauer2019-06-06
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| * | iv: only use patchelf on linuxMatthew Bauer2019-06-05
* | | picard-tools: 2.19.2 -> 2.20.2R. RyanTM2019-06-02
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* | Merge pull request #61997 from r-ryantm/auto-update/stacksRyan Mulligan2019-05-24
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| * | stacks: 2.3e -> 2.4R. RyanTM2019-05-24
* | | Merge pull request #58369 from bzizou/clustaloRobin Gloster2019-05-18
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| * | clustal-omega: init at 1.2.4Bruno Bzeznik2019-03-26
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* | eggnog-mapper: fix patch URL and hashRenaud2019-05-13
* | minimap2: 2.16 -> 2.17R. RyanTM2019-05-11
* | Merge master into staging-nextFrederik Rietdijk2019-05-02
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| * | picard-tools: 2.19.0 -> 2.19.2R. RyanTM2019-05-01
* | | Merge master into staging-nextFrederik Rietdijk2019-05-01
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| * | bowtie2: 2.3.5 -> 2.3.5.1R. RyanTM2019-05-01
* | | Merge pull request #60447 from matthewbauer/macos-10-12-fixupsMatthew Bauer2019-04-30
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| * | | treewide: make -Wno-error flags clang-onlyMatthew Bauer2019-04-29
* | | | Merge staging-next into stagingFrederik Rietdijk2019-04-30
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| * | aragorn: init at 1.2.38 (#58354)Bruno Bzeznik2019-04-29
* | | Merge pull request #56744 from matthewbauer/macos-10-12Matthew Bauer2019-04-26
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| * | treewide: disable -Werror for llvm 7Matthew Bauer2019-04-26
* | | Merge pull request #58534 from bzizou/sumatools.devRenaud2019-04-24
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| * | sumatools: init at 1.0.34Bruno Bzeznik2019-04-19
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* | picard-tools: 2.18.27 -> 2.19.0 (#59634)R. RyanTM2019-04-20
* | Merge pull request #58377 from bzizou/exonerateAaron Andersen2019-04-19
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| * | exonerate: init at 2.4.0Bruno Bzeznik2019-04-19
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* | Prodigal: init at 2.6.3Luis Pedro Coelho2019-04-19
* | star: 2.7.0c -> 2.7.0fR. RyanTM2019-04-16
* | eggnog-mapper: init at 1.0.3 (#58905)Luis Pedro Coelho2019-04-14
* | Merge master into staging-nextFrederik Rietdijk2019-04-07
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| * \ Merge pull request #58931 from bzizou/migratePascal Wittmann2019-04-06
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| | * | migrate: init at 3.7.2Bruno Bzeznik2019-04-05
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* | | Merge branch 'master' into stagingJan Tojnar2019-04-05
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| * | Merge pull request #58538 from bzizou/stacksmarkuskowa2019-04-03
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| | * | stacks: init at 2.3eBruno Bzeznik2019-04-03
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| * | Merge pull request #58541 from luispedro/add_megahitmarkuskowa2019-03-31
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| | * | megahit: init at 1.1.4Luis Pedro Coelho2019-03-31
| * | | bowtie2: 2.3.4.3 -> 2.3.5 (#58014)R. RyanTM2019-03-31
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| * | minimap2: 2.15 -> 2.16 (#57319)R. RyanTM2019-03-27
| * | paml: 4.9h -> 4.9i (#57354)R. RyanTM2019-03-27
* | | Merge commit '18aa59b0f26fc707e7313f8467e67159e61600c2' from master into stagingJohn Ericson2019-04-01
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| * | itsx: init at 1.1.1Bruno Bzeznik2019-03-26
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| * Merge pull request #56522 from bzizou/messer-slimJoachim F2019-03-26
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| | * messer-slim: init at 3.2.1Bruno Bzeznik2019-02-28
* | | Merge remote-tracking branch 'origin/master' into stagingWael M. Nasreddine2019-03-21
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| * | picard-tools: 2.18.25 -> 2.18.27R. RyanTM2019-03-11