diff options
Diffstat (limited to 'pkgs/development/python-modules')
41 files changed, 318 insertions, 134 deletions
diff --git a/pkgs/development/python-modules/HTSeq/default.nix b/pkgs/development/python-modules/HTSeq/default.nix new file mode 100644 index 000000000000..7cbe523ba1ec --- /dev/null +++ b/pkgs/development/python-modules/HTSeq/default.nix @@ -0,0 +1,20 @@ +{ stdenv, buildPythonPackage, fetchPypi, cython, numpy, pysam, matplotlib +}: +buildPythonPackage rec { + version = "0.11.2"; + pname = "HTSeq"; + + src = fetchPypi { + inherit pname version; + sha256 = "65c4c13968506c7df92e97124df96fdd041c4476c12a548d67350ba8b436bcfc"; + }; + + buildInputs = [ cython numpy pysam ]; + propagatedBuildInputs = [ numpy pysam matplotlib ]; + + meta = with stdenv.lib; { + description = "A framework to work with high-throughput sequencing data"; + maintainers = with maintainers; [ unode ]; + platforms = platforms.unix; + }; +} diff --git a/pkgs/development/python-modules/addic7ed-cli/default.nix b/pkgs/development/python-modules/addic7ed-cli/default.nix index a9720f45ef6f..b87a084fd8c2 100644 --- a/pkgs/development/python-modules/addic7ed-cli/default.nix +++ b/pkgs/development/python-modules/addic7ed-cli/default.nix @@ -2,11 +2,11 @@ python3Packages.buildPythonApplication rec { pname = "addic7ed-cli"; - version = "1.4.5"; + version = "1.4.6"; src = python3Packages.fetchPypi { inherit pname version; - sha256 = "16nmyw7j2igx5dxflwiwblf421g69rxb879n1553wv6hxi4x27in"; + sha256 = "182cpwxpdybsgl1nps850ysvvjbqlnx149kri4hxhgm58nqq0qf5"; }; propagatedBuildInputs = with python3Packages; [ diff --git a/pkgs/development/python-modules/alot/default.nix b/pkgs/development/python-modules/alot/default.nix index bda0e677f4a7..9dd3a449664e 100644 --- a/pkgs/development/python-modules/alot/default.nix +++ b/pkgs/development/python-modules/alot/default.nix @@ -7,7 +7,7 @@ buildPythonPackage rec { pname = "alot"; - version = "0.8"; + version = "0.8.1"; outputs = [ "out" ] ++ lib.optional withManpage "man"; disabled = !isPy3k; @@ -16,7 +16,7 @@ buildPythonPackage rec { owner = "pazz"; repo = "alot"; rev = version; - sha256 = "1isn0p0i2a7dlbrdk5ib01xa1wgi6bi9ka4xl4vj8iw1q4i5fqv9"; + sha256 = "1gzis6w45d860mr2qbmjhnbrhy6d9xwhw27wpmvs56vndafvv9d3"; }; nativeBuildInputs = lib.optional withManpage sphinx; @@ -57,6 +57,6 @@ buildPythonPackage rec { description = "Terminal MUA using notmuch mail"; license = licenses.gpl3; platforms = platforms.linux; - maintainers = with maintainers; [ ]; + maintainers = with maintainers; [ geistesk ]; }; } diff --git a/pkgs/development/python-modules/ansi2html/default.nix b/pkgs/development/python-modules/ansi2html/default.nix new file mode 100644 index 000000000000..2a705b53538a --- /dev/null +++ b/pkgs/development/python-modules/ansi2html/default.nix @@ -0,0 +1,23 @@ +{ lib, buildPythonPackage, fetchPypi, isPy3k, six, mock, nose, setuptools }: + +buildPythonPackage rec { + pname = "ansi2html"; + version = "1.5.2"; + + src = fetchPypi { + inherit pname version; + sha256 = "1a9vihsvd03hb0a4dbiklyy686adp9q2ipl79mkxmdr6gfp8bbln"; + }; + + propagatedBuildInputs = [ six setuptools ]; + + checkInputs = [ mock nose ]; + + meta = with lib; { + description = "Convert text with ANSI color codes to HTML"; + homepage = http://github.com/ralphbean/ansi2html; + license = licenses.lgpl3Plus; + maintainers = with maintainers; [ davidtwco ]; + platforms = platforms.all; + }; +} diff --git a/pkgs/development/python-modules/ansible-runner/default.nix b/pkgs/development/python-modules/ansible-runner/default.nix index 56850dcf86e6..79b1d8fcc977 100644 --- a/pkgs/development/python-modules/ansible-runner/default.nix +++ b/pkgs/development/python-modules/ansible-runner/default.nix @@ -13,11 +13,11 @@ buildPythonPackage rec { pname = "ansible-runner"; - version = "1.3.4"; + version = "1.4.1"; src = fetchPypi { inherit pname version; - sha256 = "087jk00kv0qsqqspyn015nicvbl627wck3fgx2qhqawvrgqk3xb0"; + sha256 = "1j3jisiy93026ivd28j0c3p2j7ij6zm2k765yjknfx2gg3m5pk14"; }; checkInputs = [ pytest mock ]; diff --git a/pkgs/development/python-modules/antlr4-python2-runtime/default.nix b/pkgs/development/python-modules/antlr4-python2-runtime/default.nix index b343be1d7bbf..aa18a0fe2907 100644 --- a/pkgs/development/python-modules/antlr4-python2-runtime/default.nix +++ b/pkgs/development/python-modules/antlr4-python2-runtime/default.nix @@ -1,18 +1,21 @@ -{ stdenv, fetchPypi, buildPythonPackage, isPy3k }: +{ lib, buildPythonPackage, isPy3k, python +, antlr4 +}: buildPythonPackage rec { pname = "antlr4-python2-runtime"; - version = "4.7.2"; + inherit (antlr4.runtime.cpp) version src; disabled = isPy3k; - src = fetchPypi { - inherit pname version; - sha256 = "04ljic5wnqpizln8q3c78pqrckz6q5nb433if00j1mlyv2yja22q"; - }; + sourceRoot = "source/runtime/Python2"; + + checkPhase = '' + ${python.interpreter} tests/TestTokenStreamRewriter.py + ''; - meta = { + meta = with lib; { description = "Runtime for ANTLR"; homepage = "https://www.antlr.org/"; - license = stdenv.lib.licenses.bsd3; + license = licenses.bsd3; }; } diff --git a/pkgs/development/python-modules/antlr4-python3-runtime/default.nix b/pkgs/development/python-modules/antlr4-python3-runtime/default.nix index 3ebba9f9d385..0fade1362c9c 100644 --- a/pkgs/development/python-modules/antlr4-python3-runtime/default.nix +++ b/pkgs/development/python-modules/antlr4-python3-runtime/default.nix @@ -1,18 +1,22 @@ -{ stdenv, fetchPypi, buildPythonPackage, isPy3k }: +{ lib, buildPythonPackage, isPy3k, python +, antlr4 +}: buildPythonPackage rec { pname = "antlr4-python3-runtime"; - version = "4.7.2"; + inherit (antlr4.runtime.cpp) version src; disabled = !isPy3k; - src = fetchPypi { - inherit pname version; - sha256 = "02xm7ccsf51vh4xsnhlg6pvchm1x3ckgv9kwm222w5drizndr30n"; - }; + sourceRoot = "source/runtime/Python3"; + + checkPhase = '' + cd test + ${python.interpreter} ctest.py + ''; - meta = { + meta = with lib; { description = "Runtime for ANTLR"; homepage = "https://www.antlr.org/"; - license = stdenv.lib.licenses.bsd3; + license = licenses.bsd3; }; } diff --git a/pkgs/development/python-modules/asdf/default.nix b/pkgs/development/python-modules/asdf/default.nix index 8efc251140a8..6d685429e50b 100644 --- a/pkgs/development/python-modules/asdf/default.nix +++ b/pkgs/development/python-modules/asdf/default.nix @@ -9,18 +9,26 @@ , numpy , isPy27 , astropy +, setuptools_scm +, setuptools }: buildPythonPackage rec { pname = "asdf"; - version = "2.3.3"; + version = "2.4.2"; disabled = isPy27; src = fetchPypi { inherit pname version; - sha256 = "d02e936a83abd206e7bc65050d94e8848da648344dbec9e49dddc2bdc3bd6870"; + sha256 = "1wlgx8469wwsczc2gjka9k1a03yzird67zg3va0kg8y6j1qmbwvg"; }; + postPatch = '' + substituteInPlace setup.cfg \ + --replace "semantic_version>=2.3.1,<=2.6.0" "semantic_version>=2.3.1" \ + --replace "doctest_plus = enabled" "" + ''; + checkInputs = [ pytest-astropy astropy @@ -32,6 +40,8 @@ buildPythonPackage rec { jsonschema six numpy + setuptools_scm + setuptools ]; checkPhase = '' diff --git a/pkgs/development/python-modules/asyncpg/default.nix b/pkgs/development/python-modules/asyncpg/default.nix index a71ffd853675..6722d3ee0fd6 100644 --- a/pkgs/development/python-modules/asyncpg/default.nix +++ b/pkgs/development/python-modules/asyncpg/default.nix @@ -14,7 +14,7 @@ buildPythonPackage rec { patches = [ (fetchpatch { url = "https://github.com/MagicStack/asyncpg/commit/aaeb7076e5acb045880b46155014c0640624797e.patch"; - sha256 = "0r6g6pvb39vzci8g67mv9rlrvavqvfz6vlv8988wv53bpz1mss3p"; + sha256 = "0l420cmk7469wgb1xq2rxinvja1f2brb5cm4smj2s2wqgymbrf6h"; }) ]; diff --git a/pkgs/development/python-modules/awkward/default.nix b/pkgs/development/python-modules/awkward/default.nix index a2d19e9ee3c5..b515892cfb00 100644 --- a/pkgs/development/python-modules/awkward/default.nix +++ b/pkgs/development/python-modules/awkward/default.nix @@ -11,11 +11,11 @@ buildPythonPackage rec { pname = "awkward"; - version = "0.12.6"; + version = "0.12.12"; src = fetchPypi { inherit pname version; - sha256 = "0xvphwpa1n5q7kim4dw6fmsg9h5kkk7nd51bv9b36i3n4hilmq32"; + sha256 = "316abd04dd049d56567082670ae8800c265dc3f06b699cf2a953ea6aea7696ce"; }; nativeBuildInputs = [ pytestrunner ]; diff --git a/pkgs/development/python-modules/azure-mgmt-compute/default.nix b/pkgs/development/python-modules/azure-mgmt-compute/default.nix index 3df307242cf4..1713ca654059 100644 --- a/pkgs/development/python-modules/azure-mgmt-compute/default.nix +++ b/pkgs/development/python-modules/azure-mgmt-compute/default.nix @@ -7,13 +7,13 @@ }: buildPythonPackage rec { - version = "5.0.0"; + version = "8.0.0"; pname = "azure-mgmt-compute"; src = fetchPypi { inherit pname version; extension = "zip"; - sha256 = "1zdypc8f825n60341ai2482rwgsc7l8dpr691j8hqz571l80y85w"; + sha256 = "06hmf9iq2yqpmmvw7pr9zm4v427q03i436lnin3aczizfndrk76i"; }; postInstall = if isPy3k then "" else '' diff --git a/pkgs/development/python-modules/azure-mgmt-containerservice/default.nix b/pkgs/development/python-modules/azure-mgmt-containerservice/default.nix index 5e68ef2d3837..f66712e6f719 100644 --- a/pkgs/development/python-modules/azure-mgmt-containerservice/default.nix +++ b/pkgs/development/python-modules/azure-mgmt-containerservice/default.nix @@ -10,12 +10,12 @@ buildPythonPackage rec { pname = "azure-mgmt-containerservice"; - version = "5.3.0"; + version = "7.0.0"; src = fetchPypi { inherit pname version; extension = "zip"; - sha256 = "1dhni22n85x76709mvjmby8i8hvginzniq1dna6f5cidfcalc0vs"; + sha256 = "104w7rxv7hy84yzddbbpkjqha04ghr0zz9qy788n3wl69cj4cv1a"; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/azure-mgmt-storage/default.nix b/pkgs/development/python-modules/azure-mgmt-storage/default.nix index b8b39292e5f6..d056a7ad598c 100644 --- a/pkgs/development/python-modules/azure-mgmt-storage/default.nix +++ b/pkgs/development/python-modules/azure-mgmt-storage/default.nix @@ -7,13 +7,13 @@ }: buildPythonPackage rec { - version = "4.0.0"; + version = "4.1.0"; pname = "azure-mgmt-storage"; src = fetchPypi { inherit pname version; extension = "zip"; - sha256 = "1kxd30s2axn3g4qx3v7q3d5l744a29xlfk3q06ra0rqm1p6prvgv"; + sha256 = "1src3ki3xd8x0m6vmxig6y4lg7w4mg0sz6vmnsxdk8mxaird03jj"; }; postInstall = if isPy3k then "" else '' diff --git a/pkgs/development/python-modules/bleach/default.nix b/pkgs/development/python-modules/bleach/default.nix index 7de124267f0e..86b253a72c95 100644 --- a/pkgs/development/python-modules/bleach/default.nix +++ b/pkgs/development/python-modules/bleach/default.nix @@ -5,6 +5,7 @@ , pytestrunner , six , html5lib +, setuptools }: buildPythonPackage rec { @@ -17,7 +18,7 @@ buildPythonPackage rec { }; checkInputs = [ pytest pytestrunner ]; - propagatedBuildInputs = [ six html5lib ]; + propagatedBuildInputs = [ six html5lib setuptools ]; postPatch = '' substituteInPlace setup.py --replace ",<3dev" "" diff --git a/pkgs/development/python-modules/cgen/default.nix b/pkgs/development/python-modules/cgen/default.nix index e0317249fe9f..f6cf985349b9 100644 --- a/pkgs/development/python-modules/cgen/default.nix +++ b/pkgs/development/python-modules/cgen/default.nix @@ -8,11 +8,11 @@ buildPythonPackage rec { pname = "cgen"; - version = "2017.1"; + version = "2019.1"; src = fetchPypi { inherit pname version; - sha256 = "a04525d51ee975d37d590d6d82bf80a46e77f75187cccfd2248a89616a778795"; + sha256 = "04gxzfjy2f9qsg3scg1sx4q4rhw5p036dyqngxyfsai0wvj5ya6m"; }; checkInputs = [ pytest ]; diff --git a/pkgs/development/python-modules/chart-studio/default.nix b/pkgs/development/python-modules/chart-studio/default.nix new file mode 100644 index 000000000000..0eed42dc286e --- /dev/null +++ b/pkgs/development/python-modules/chart-studio/default.nix @@ -0,0 +1,44 @@ +{ lib, buildPythonPackage, fetchFromGitHub +, mock +, nose +, plotly +, pytest +, requests +, retrying +, six +}: + +buildPythonPackage rec { + pname = "chart-studio"; + version = "1.0.0"; + + # chart-studio was split from plotly + src = fetchFromGitHub { + owner = "plotly"; + repo = "plotly.py"; + rev = "${pname}-v${version}"; + sha256 = "14lyqbjdffnlnkzlfnn60k7yxjd99vx3hfcs23apsiyinzipjlbf"; + }; + + sourceRoot = "source/packages/python/chart-studio"; + + propagatedBuildInputs = [ + plotly + requests + retrying + six + ]; + + checkInputs = [ mock nose pytest ]; + # most tests talk to a service + checkPhase = '' + HOME=$TMPDIR pytest chart_studio/tests/test_core chart_studio/tests/test_plot_ly/test_api + ''; + + meta = with lib; { + description = "Utilities for interfacing with Plotly's Chart Studio service"; + homepage = "https://github.com/plotly/plotly.py/tree/master/packages/python/chart-studio"; + license = with licenses; [ mit ]; + maintainers = with maintainers; [ jonringer ]; + }; +} diff --git a/pkgs/development/python-modules/colorcet/default.nix b/pkgs/development/python-modules/colorcet/default.nix index b877c4cabd5f..4ae6dd8e4795 100644 --- a/pkgs/development/python-modules/colorcet/default.nix +++ b/pkgs/development/python-modules/colorcet/default.nix @@ -11,11 +11,11 @@ buildPythonPackage rec { pname = "colorcet"; - version = "2.0.1"; + version = "2.0.2"; src = fetchPypi { inherit pname version; - sha256 = "ab1d16aba97f54af190631c7777c356b04b53de549672ff6b01c66d716eddff3"; + sha256 = "1vkx00im4s6zhr2m1j9r0a5vmhkl488b4xpzxb1pidbl19wi6j2i"; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/cufflinks/default.nix b/pkgs/development/python-modules/cufflinks/default.nix index 18693a204c53..ed25c2c73717 100644 --- a/pkgs/development/python-modules/cufflinks/default.nix +++ b/pkgs/development/python-modules/cufflinks/default.nix @@ -1,40 +1,59 @@ -{ buildPythonPackage, stdenv, fetchPypi, fetchpatch -, numpy, pandas, plotly, six, colorlover -, ipython, ipywidgets, nose +{ lib, buildPythonPackage, fetchPypi, fetchpatch +, chart-studio +, colorlover +, ipython +, ipywidgets +, nose +, numpy +, pandas +, six +, statsmodels }: buildPythonPackage rec { pname = "cufflinks"; - version = "0.15"; + version = "0.16"; src = fetchPypi { inherit pname version; - sha256 = "014098a4568199957198c0a7fe3dbeb3b4010b6de8d692a41fe3b3ac107b660e"; + sha256 = "163lag5g4micpqm3m4qy9b5r06a7pw45nq80x4skxc7dcrly2ygd"; }; propagatedBuildInputs = [ - numpy pandas plotly six colorlover - ipython ipywidgets + chart-studio + colorlover + ipython + ipywidgets + numpy + pandas + six + statsmodels ]; patches = [ - # Plotly 3.8 compatibility. Remove with the next release. See https://github.com/santosjorge/cufflinks/pull/178 + # Plotly 4 compatibility. Remove with next release, assuming it gets merged. (fetchpatch { - url = "https://github.com/santosjorge/cufflinks/commit/cc4c23c2b45b870f6801d1cb0312948e1f73f424.patch"; - sha256 = "1psl2h7vscpzvb4idr6s175v8znl2mfhkcyhb1926p4saswmghw1"; + url = "https://github.com/santosjorge/cufflinks/pull/202/commits/e291dce14181858cb457404adfdaf2624b6d0594.patch"; + sha256 = "1l0dahwqn3cxg49v3i3amwi80dmx2bi5zrazmgzpwsfargmk2kd1"; }) ]; + # in plotly4+, the plotly.plotly module was moved to chart-studio.plotly + postPatch = '' + substituteInPlace requirements.txt \ + --replace "plotly>=3.0.0,<4.0.0a0" "chart-studio" + ''; + checkInputs = [ nose ]; checkPhase = '' nosetests -xv tests.py ''; - meta = { - homepage = https://github.com/santosjorge/cufflinks; + meta = with lib; { description = "Productivity Tools for Plotly + Pandas"; - license = stdenv.lib.licenses.mit; - maintainers = with stdenv.lib.maintainers; [ globin ]; + homepage = "https://github.com/santosjorge/cufflinks"; + license = licenses.mit; + maintainers = with maintainers; [ globin ]; }; } diff --git a/pkgs/development/python-modules/devpi-common/default.nix b/pkgs/development/python-modules/devpi-common/default.nix index 6bdda6ac5ea7..72db5d1b0ec8 100644 --- a/pkgs/development/python-modules/devpi-common/default.nix +++ b/pkgs/development/python-modules/devpi-common/default.nix @@ -1,16 +1,21 @@ -{ lib, buildPythonPackage, fetchPypi, requests, py, pytest, pytest-flakes }: +{ lib, buildPythonPackage, fetchPypi +, requests +, py +, pytest +, pytest-flake8 +}: buildPythonPackage rec { pname = "devpi-common"; - version = "3.3.2"; + version = "3.4.0"; src = fetchPypi { inherit pname version; - sha256 = "2c7a6471c0f5b07ac9257adec3b3c3a89193ee672fdeb0a6f29487dc9d675e0c"; + sha256 = "1pfl29pnfn120rqv3zwxc22i1hyywwg60rcck9hzxsllbhmfbjqh"; }; propagatedBuildInputs = [ requests py ]; - checkInputs = [ pytest pytest-flakes ]; + checkInputs = [ pytest pytest-flake8 ]; checkPhase = '' py.test diff --git a/pkgs/development/python-modules/djangoql/default.nix b/pkgs/development/python-modules/djangoql/default.nix index 98f9c04c09fc..a2bf586442c8 100644 --- a/pkgs/development/python-modules/djangoql/default.nix +++ b/pkgs/development/python-modules/djangoql/default.nix @@ -3,11 +3,11 @@ buildPythonPackage rec { pname = "djangoql"; - version = "0.12.6"; + version = "0.13.0"; src = fetchPypi { inherit pname version; - sha256 = "1mwv1ljznj9mn74ncvcyfmj6ygs8xm2rajpxm88gcac9hhdmk5gs"; + sha256 = "0hkg0zh8w6f4krbrv4nl66blrx48yixgc8ikf915415ghlqfsbjj"; }; propagatedBuildInputs = [ ply ]; diff --git a/pkgs/development/python-modules/ephem/default.nix b/pkgs/development/python-modules/ephem/default.nix index 742fdb83b72e..9069bef68e04 100644 --- a/pkgs/development/python-modules/ephem/default.nix +++ b/pkgs/development/python-modules/ephem/default.nix @@ -3,11 +3,11 @@ buildPythonPackage rec { pname = "ephem"; - version = "3.7.6.0"; + version = "3.7.7.0"; src = fetchPypi { inherit pname version; - sha256 = "7a4c82b1def2893e02aec0394f108d24adb17bd7b0ca6f4bc78eb7120c0212ac"; + sha256 = "0dj4kk325b01s7q1zkwpm9rrzl7n1jf7fr92wcajjhc5kx14hwb0"; }; patchFlags = "-p0"; @@ -17,11 +17,6 @@ buildPythonPackage rec { LC_ALL="en_US.UTF-8" py.test --pyargs ephem.tests -k "not JPLTest" ''; - # Unfortunately, the tests are broken for Python 3 in 3.7.6.0. They have been - # fixed in https://github.com/brandon-rhodes/pyephem/commit/c8633854e2d251a198b0f701d0528b508baa2411 - # but there has not been a new release since then. - doCheck = !isPy3k; - meta = with stdenv.lib; { description = "Compute positions of the planets and stars"; homepage = https://pypi.python.org/pypi/ephem/; diff --git a/pkgs/development/python-modules/feedgen/default.nix b/pkgs/development/python-modules/feedgen/default.nix index 67ff86e8f729..d59f0a702aa7 100644 --- a/pkgs/development/python-modules/feedgen/default.nix +++ b/pkgs/development/python-modules/feedgen/default.nix @@ -2,11 +2,11 @@ buildPythonPackage rec { pname = "feedgen"; - version = "0.7.0"; + version = "0.8.0"; src = fetchPypi { inherit pname version; - sha256 = "82c9e29884e137c3e3e7959a02f142d1f7a46cd387d572e9e40150112a27604f"; + sha256 = "0551ixbcz2gaala4gi3i8gici3haijj7dhvjsz1a61s050276m96"; }; propagatedBuildInputs = [ dateutil lxml ]; diff --git a/pkgs/development/python-modules/foxdot/default.nix b/pkgs/development/python-modules/foxdot/default.nix index ed4f950e3631..0ba46c1832bc 100644 --- a/pkgs/development/python-modules/foxdot/default.nix +++ b/pkgs/development/python-modules/foxdot/default.nix @@ -2,11 +2,11 @@ buildPythonPackage rec { pname = "FoxDot"; - version = "0.8.1"; + version = "0.8.3"; src = fetchPypi { inherit pname version; - sha256 = "147n2c9rwmrby8rr6xfxlh7mfm12lqk2a7v1gxlzhq1i2jj1j5h4"; + sha256 = "07ll1rh1bkq1dpb7gxd86jsjhxni73kp9iljiy0d2b86ji8h108p"; }; propagatedBuildInputs = [ tkinter supercollider ]; diff --git a/pkgs/development/python-modules/git-revise/default.nix b/pkgs/development/python-modules/git-revise/default.nix index 86d4decc6d8f..905f38739b26 100644 --- a/pkgs/development/python-modules/git-revise/default.nix +++ b/pkgs/development/python-modules/git-revise/default.nix @@ -1,7 +1,7 @@ { lib , buildPythonPackage , fetchPypi -, pythonAtLeast +, pythonOlder , tox , pytest , pylint @@ -11,14 +11,14 @@ buildPythonPackage rec { pname = "git-revise"; - version = "0.4.2"; + version = "0.5.0"; src = fetchPypi { inherit pname version; - sha256 = "1mq1fh8m6jxl052d811cgpl378hiq20a8zrhdjn0i3dqmxrcb8vs"; + sha256 = "16sxmxksb5gjj6zfh1wy2czqj9nm4sd3j4fbrsphs8l065dzzikj"; }; - disabled = !(pythonAtLeast "3.6"); + disabled = pythonOlder "3.6"; checkInputs = [ tox pytest pylint mypy black ]; @@ -29,6 +29,7 @@ buildPythonPackage rec { meta = with lib; { description = "Efficiently update, split, and rearrange git commits"; homepage = https://github.com/mystor/git-revise; + changelog = "https://github.com/mystor/git-revise/blob/${version}/CHANGELOG.md"; license = licenses.mit; maintainers = with maintainers; [ emily ]; }; diff --git a/pkgs/development/python-modules/goobook/default.nix b/pkgs/development/python-modules/goobook/default.nix index e63c97c67936..4e14b14c2aa1 100644 --- a/pkgs/development/python-modules/goobook/default.nix +++ b/pkgs/development/python-modules/goobook/default.nix @@ -4,12 +4,12 @@ buildPythonPackage rec { pname = "goobook"; - version = "3.3"; + version = "3.4"; disabled = !isPy3k; src = fetchPypi { inherit pname version; - sha256 = "0sanlki1rcqvhbds7a049v2kzglgpm761i728115mdracw0s6i3h"; + sha256 = "089a95s6g9izsy1fzpz48p6pz0wpngcbbrvsillm1n53492gfhjg"; }; propagatedBuildInputs = [ google_api_python_client simplejson oauth2client ]; diff --git a/pkgs/development/python-modules/hcloud/default.nix b/pkgs/development/python-modules/hcloud/default.nix new file mode 100644 index 000000000000..8d8e2c506894 --- /dev/null +++ b/pkgs/development/python-modules/hcloud/default.nix @@ -0,0 +1,38 @@ +{ lib +, buildPythonPackage +, fetchPypi +, future +, requests +, python-dateutil +, flake8 +, isort +, mock +, pytest +}: + +buildPythonPackage rec { + pname = "hcloud"; + version = "1.6.1"; + + src = fetchPypi { + inherit pname version; + sha256 = "1skqq36k1dm7mngfg9c93pb1rdvmbapc0cv8zj00hnm63r67hmrj"; + }; + + propagatedBuildInputs = [ future requests python-dateutil ]; + + checkInputs = [ flake8 isort mock pytest ]; + + # Skip integration tests since they require a separate external fake API endpoint. + checkPhase = '' + pytest --ignore=tests/integration + ''; + + meta = with lib; { + description = "Official Hetzner Cloud python library"; + homepage = "https://github.com/hetznercloud/hcloud-python"; + license = licenses.mit; + platforms = platforms.all; + maintainers = with maintainers; [ liff ]; + }; +} \ No newline at end of file diff --git a/pkgs/development/python-modules/mlrose/default.nix b/pkgs/development/python-modules/mlrose/default.nix index f7d43115a1b5..6222921db746 100644 --- a/pkgs/development/python-modules/mlrose/default.nix +++ b/pkgs/development/python-modules/mlrose/default.nix @@ -1,8 +1,9 @@ -{ stdenv, buildPythonPackage, fetchPypi, scikitlearn }: +{ stdenv, isPy27, buildPythonPackage, fetchPypi, scikitlearn }: buildPythonPackage rec { pname = "mlrose"; version = "1.2.0"; + disabled = isPy27; src = fetchPypi { inherit pname version; diff --git a/pkgs/development/python-modules/nixpkgs-pytools/default.nix b/pkgs/development/python-modules/nixpkgs-pytools/default.nix index 4a943e32d4c5..ebb8b7c70eb7 100644 --- a/pkgs/development/python-modules/nixpkgs-pytools/default.nix +++ b/pkgs/development/python-modules/nixpkgs-pytools/default.nix @@ -3,22 +3,24 @@ , fetchPypi , jinja2 , setuptools +, rope , isPy27 }: buildPythonPackage rec { pname = "nixpkgs-pytools"; - version = "1.0.1"; + version = "1.3.0"; disabled = isPy27; src = fetchPypi { inherit pname version; - sha256 = "0796c6e95daeb3d7e61c9c53126d95ba6a48f84b995b12b60f45619caf28a574"; + sha256 = "11skcbi1lf9qcv9j5ikifb4pakhbbygqpcmv3390j7gxsa85cn19"; }; propagatedBuildInputs = [ jinja2 setuptools + rope ]; # tests require network .. diff --git a/pkgs/development/python-modules/openrazer/daemon.nix b/pkgs/development/python-modules/openrazer/daemon.nix index 6e3ab1e78338..dd54851ea812 100644 --- a/pkgs/development/python-modules/openrazer/daemon.nix +++ b/pkgs/development/python-modules/openrazer/daemon.nix @@ -1,4 +1,5 @@ { buildPythonApplication +, isPy3k , daemonize , dbus-python , fetchFromGitHub @@ -21,6 +22,8 @@ buildPythonApplication (common // rec { sourceRoot = "source/daemon"; + disabled = !isPy3k; + outputs = [ "out" "man" ]; nativeBuildInputs = [ makeWrapper wrapGAppsHook ]; diff --git a/pkgs/development/python-modules/pandas/default.nix b/pkgs/development/python-modules/pandas/default.nix index 6f1c2c68dd31..8abe4d3bf24b 100644 --- a/pkgs/development/python-modules/pandas/default.nix +++ b/pkgs/development/python-modules/pandas/default.nix @@ -30,11 +30,11 @@ let in buildPythonPackage rec { pname = "pandas"; - version = "0.25.0"; + version = "0.25.1"; src = fetchPypi { inherit pname version; - sha256 = "914341ad2d5b1ea522798efa4016430b66107d05781dbfe7cf05eba8f37df995"; + sha256 = "1xm9dmbngsq46vj836csnb5j0bs88b1d713b0b5vx1q6gdxijbnb"; }; checkInputs = [ pytest glibcLocales moto hypothesis ]; diff --git a/pkgs/development/python-modules/preshed/default.nix b/pkgs/development/python-modules/preshed/default.nix index 287b1294b5fe..60f551bec16c 100644 --- a/pkgs/development/python-modules/preshed/default.nix +++ b/pkgs/development/python-modules/preshed/default.nix @@ -1,6 +1,7 @@ { stdenv , buildPythonPackage , fetchPypi +, murmurhash , pytest , cython , cymem @@ -8,27 +9,23 @@ }: buildPythonPackage rec { pname = "preshed"; - version = "2.0.1"; + version = "3.0.2"; src = fetchPypi { inherit pname version; - sha256 = "1rd943zp4gyspajqm5qxzndxziyh51grx0zcw23w8r9r65s1rq6s"; + sha256 = "1jrnci1pw9yv7j1a9b2q6c955l3gb8fv1q4d0id6s7bwr5l39mv1"; }; propagatedBuildInputs = [ cython cymem + murmurhash ]; - buildInputs = [ + checkInputs = [ pytest ]; - prePatch = '' - substituteInPlace setup.py \ - --replace "wheel>=0.32.0,<0.33.0" "wheel>=0.31.0" - ''; - checkPhase = '' ${python.interpreter} setup.py test ''; diff --git a/pkgs/development/python-modules/psycopg2/default.nix b/pkgs/development/python-modules/psycopg2/default.nix index dae97d87ef2a..7ce65aea2cac 100644 --- a/pkgs/development/python-modules/psycopg2/default.nix +++ b/pkgs/development/python-modules/psycopg2/default.nix @@ -2,13 +2,13 @@ buildPythonPackage rec { pname = "psycopg2"; - version = "2.7.7"; + version = "2.8.3"; disabled = isPyPy; src = fetchPypi { inherit pname version; - sha256 = "f4526d078aedd5187d0508aa5f9a01eae6a48a470ed678406da94b4cd6524b7e"; + sha256 = "0ms4kx0p5n281l89awccix4d05ybmdngnjjpi9jbzd0rhf1nwyl9"; }; buildInputs = lib.optional stdenv.isDarwin openssl; diff --git a/pkgs/development/python-modules/pykde4/default.nix b/pkgs/development/python-modules/pykde4/default.nix index 913453962eb5..d2c66c8cd2c3 100644 --- a/pkgs/development/python-modules/pykde4/default.nix +++ b/pkgs/development/python-modules/pykde4/default.nix @@ -37,6 +37,7 @@ in stdenv.mkDerivation rec { meta = with stdenv.lib; { platforms = platforms.linux; + hydraPlatforms = platforms.none; description = "Python bindings for KDE"; license = with licenses; [ gpl2 lgpl2 ]; homepage = https://api.kde.org/pykde-4.3-api/; diff --git a/pkgs/development/python-modules/pykde4/kdelibs.nix b/pkgs/development/python-modules/pykde4/kdelibs.nix index 9803e7800c37..e6f20b8248b8 100644 --- a/pkgs/development/python-modules/pykde4/kdelibs.nix +++ b/pkgs/development/python-modules/pykde4/kdelibs.nix @@ -1,5 +1,5 @@ { - stdenv, fetchurl, + stdenv, fetchurl, fetchpatch, automoc4, cmake_2_8, libxslt, perl, pkgconfig, shared-mime-info, attica, docbook_xml_dtd_42, docbook_xsl, giflib, libdbusmenu_qt, libjpeg, phonon, qt4, openssl @@ -12,6 +12,14 @@ stdenv.mkDerivation rec { url = "mirror://kde/stable/applications/17.08.3/src/${pname}-${version}.tar.xz"; sha256 = "1zn3yb09sd22bm54is0rn98amj0398zybl550dp406419sil7z9p"; }; + patches = [ + # https://phabricator.kde.org/D22989 + (fetchpatch { + url = "https://cgit.kde.org/kdelibs.git/patch/?id=2c3762feddf7e66cf6b64d9058f625a715694a00"; + sha256 = "1wbzywh8lcc66n6y3pxs18h7cwkq6g216faz27san33jpl8ra1i9"; + name = "CVE-2019-14744.patch"; + }) + ]; enableParallelBuilding = true; @@ -32,7 +40,9 @@ stdenv.mkDerivation rec { meta = with stdenv.lib; { platforms = platforms.linux; + hydraPlatforms = platforms.none; homepage = http://www.kde.org; license = with licenses; [ gpl2 fdl12 lgpl21 ]; + maintainers = with maintainers; [ gnidorah ]; }; } diff --git a/pkgs/development/python-modules/pysam/default.nix b/pkgs/development/python-modules/pysam/default.nix index 05f2db8ac063..e5cc2cf9da07 100644 --- a/pkgs/development/python-modules/pysam/default.nix +++ b/pkgs/development/python-modules/pysam/default.nix @@ -14,7 +14,7 @@ buildPythonPackage rec { pname = "pysam"; - version = "0.15.2"; + version = "0.15.3"; # Fetching from GitHub instead of PyPi cause the 0.13 src release on PyPi is # missing some files which cause test failures. @@ -23,7 +23,7 @@ buildPythonPackage rec { owner = "pysam-developers"; repo = "pysam"; rev = "v${version}"; - sha256 = "03aczbzx6gmvgy60fhswpwkry7a8zb5q1pbp55v5gx8hk15n40k1"; + sha256 = "0g6md20gsr24pdr9b8nj403w31ixfjv8bjhdvg3x476kjiq1kvyb"; }; buildInputs = [ bzip2 curl cython lzma zlib ]; diff --git a/pkgs/development/python-modules/qscintilla-qt5/default.nix b/pkgs/development/python-modules/qscintilla-qt5/default.nix index e8076db60534..06475c09ca8b 100644 --- a/pkgs/development/python-modules/qscintilla-qt5/default.nix +++ b/pkgs/development/python-modules/qscintilla-qt5/default.nix @@ -15,6 +15,13 @@ buildPythonPackage { buildInputs = [ qscintilla ]; propagatedBuildInputs = [ pyqt5 ]; + postPatch = '' + substituteInPlace Python/configure.py \ + --replace \ + "target_config.py_module_dir" \ + "'$out/${python.sitePackages}'" + ''; + preConfigure = '' mkdir -p $out lndir ${pyqt5} $out @@ -26,6 +33,7 @@ buildPythonPackage { --stubsdir=$out/${python.sitePackages}/PyQt5 \ --apidir=$out/api/${python.libPrefix} \ --qsci-incdir=${qscintilla}/include \ + --qsci-featuresdir=${qscintilla}/mkspecs/features \ --qsci-libdir=${qscintilla}/lib \ --pyqt-sipdir=${pyqt5}/share/sip/PyQt5 \ --qsci-sipdir=$out/share/sip/PyQt5 \ diff --git a/pkgs/development/python-modules/spacy/default.nix b/pkgs/development/python-modules/spacy/default.nix index a37f7548219b..44a9e09181cf 100644 --- a/pkgs/development/python-modules/spacy/default.nix +++ b/pkgs/development/python-modules/spacy/default.nix @@ -26,18 +26,16 @@ buildPythonPackage rec { pname = "spacy"; - version = "2.1.8"; + version = "2.2.1"; src = fetchPypi { inherit pname version; - sha256 = "1dja0crbai2n1l19m0hkv2fkj9r6zzy5ijd6dffp60v7lrch8lcw"; + sha256 = "1a833dx8i4s106fk42x4dnayaq5p3qxaxnc012xij991i09v2pxn"; }; prePatch = '' - substituteInPlace setup.py \ - --replace "plac<1.0.0,>=0.9.6" "plac>=0.9.6" \ - --replace "thinc>=7.0.8,<7.1.0" "thinc>=7.0.8" \ - --replace "blis>=0.2.2,<0.3.0" "blis>=0.2.2" + substituteInPlace setup.cfg \ + --replace "plac<1.0.0,>=0.9.6" "plac>=0.9.6" ''; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/spacy/models.json b/pkgs/development/python-modules/spacy/models.json index d8078c116c2f..d500448dfe7c 100644 --- a/pkgs/development/python-modules/spacy/models.json +++ b/pkgs/development/python-modules/spacy/models.json @@ -1,43 +1,43 @@ [{ "pname": "de_core_news_md", - "version": "2.1.0", - "sha256": "0q1flyrp2n8ja11kdlw6x1k0gll0r096pxy8ba4xv15hjng2zay1", + "version": "2.2.0", + "sha256": "1n61jg0mxpl5mqpydclq9d2xds14v0blnb0plmnf7qhzzfhrmxq9", "license": "cc-by-sa-40" }, { "pname": "de_core_news_sm", - "version": "2.1.0", - "sha256": "0fj4dqa915i6niyskxmw2318fxzjhgdjhjx79h9cpp4mxw719w95", + "version": "2.2.0", + "sha256": "06g2snm57k64il3plgn20l27a00dsr9dcxkyyqj6pq5ih91mfycb", "license": "cc-by-sa-40" }, { "pname": "el_core_news_md", - "version": "2.1.0", - "sha256": "1rgy9hlb92amhlbwkd91yh87xssqj2a1ign0wm59aai69rb79q3s", + "version": "2.2.0", + "sha256": "0xgyh5wj9mpbl2mdrk60i3m8wmgaxbf5qviy78qk8zb1jvnxzc2n", "license": "cc-by-sa-40" }, { "pname": "el_core_news_sm", - "version": "2.1.0", - "sha256": "07n7qg0nnzg5gjq7vs72j9qc6z4zjx65qsrrj0hjhiihk3ps378z", + "version": "2.2.0", + "sha256": "0qbf16g6s1xfm2clnmrwr3m3vgmvvsziyhy6jbm6axh8c0fy0j8p", "license": "cc-by-sa-40" }, { "pname": "en_core_web_lg", - "version": "2.1.0", - "sha256": "0ywcczd9nsxmpfwknxa7z54h566bwi7chq0jzx3sqk2a6lva4q52", + "version": "2.2.0", + "sha256": "1dxy43kf3vbz4jxc7jkr315hyzmi44v41lf09rax53f3s1jghsbh", "license": "cc-by-sa-40" }, { "pname": "en_core_web_md", - "version": "2.1.0", - "sha256": "10vgq1xd6dpdl7xdssgf0kywbq7xpxp79yqc2vcnl3c4axfpwk5q", + "version": "2.2.0", + "sha256": "13fvr8z7fjhyzc9mm55ah6c2snpj27lrrc0rzgyb0hcg7ghd6v58", "license": "cc-by-sa-40" }, { "pname": "en_core_web_sm", - "version": "2.1.0", - "sha256": "1wg5a7nxq82sfmnc3j5xfr8il65rprmcx2h36va5dvydm1h6icad", + "version": "2.2.0", + "sha256": "197afra99lhh84yi6wxvxdxibd1ikaybqfsq2nsmm7ahsw9s3kk5", "license": "cc-by-sa-40" }, { @@ -48,49 +48,49 @@ }, { "pname": "es_core_news_md", - "version": "2.1.0", - "sha256": "02v7hm711r9ma8p5yk057z7hm2pcvpfjgnjszc697d0ymfn4avby", + "version": "2.2.0", + "sha256": "0sdps0cdmsd2l3irsg63d874sba9vpn0san0n89rk8h3pa49dpab", "license": "cc-by-sa-40" }, { "pname": "es_core_news_sm", - "version": "2.1.0", - "sha256": "1smyyb1gqp090sailqdqp5v5ww4kf99a3hcd9d9rdhn1wgsv28dh", + "version": "2.2.0", + "sha256": "073dgna796lk4rm7f25gyyl2ml7dfsb4azd4jkk03kxkcy6ypnag", "license": "cc-by-sa-40" }, { "pname": "fr_core_news_md", - "version": "2.1.0", - "sha256": "0n94ja7y4jbvz0k0x5bij2dypy11ikvgpd9dav0m0hw1wpqgls1i", + "version": "2.2.0", + "sha256": "0061hnw03189z3ya1gb6506bq8yxrg17v9cywg7zbk6izakxcasr", "license": "cc-by-sa-40" }, { "pname": "fr_core_news_sm", - "version": "2.1.0", - "sha256": "1czr40y5sqs0n2dd4s37kc2xawkh2nsj41wvmsx48bw0aksb1n75", + "version": "2.2.0", + "sha256": "0kj31kx4q9mm7ms622ph2i6pkl1ifm8s5ng3f3khf9ia0vr31vbq", "license": "cc-by-sa-40" }, { "pname": "it_core_news_sm", - "version": "2.1.0", - "sha256": "1i8dm703mf1l39jwis3mn5mb9azpx6bsimh66iriax94612x64mb", + "version": "2.2.0", + "sha256": "0gxmknd68kajak8jr443799bfd69pp5j0jnmcbnyx5abzyq6wkzx", "license": "cc-by-sa-40" }, { "pname": "nl_core_news_sm", - "version": "2.1.0", - "sha256": "0ywyn7jprsfr10bvwnm3qk270raxm9s9rvzyp1cp7ca037ab633y", + "version": "2.2.1", + "sha256": "0gw9a1j3v4f15cxcz7zr7dz7mqi2a3541b04q6kj74gg397li4ny", "license": "cc-by-sa-40" }, { "pname": "pt_core_news_sm", - "version": "2.1.0", - "sha256": "0vigc9x7158sdqxjgcxgvp6458k5936jlmlp2qdmlmzxr5wmfrbc", + "version": "2.2.0", + "sha256": "1fi4wick1x96sj46idic1ad26l9zd2p5smi4v7mkry71xp7d9s13", "license": "cc-by-sa-40" }, { "pname": "xx_ent_wiki_sm", - "version": "2.1.0", - "sha256": "19sfsxwjqdzlfm43gb4hbyj0hgqcfhcfxwdib4g5i1pcfx1v3pf4", + "version": "2.2.0", + "sha256": "0niwnd1mdaji92yp2dqsbmr0w420gpaybb1ppbqr1rmk6bwgyhsb", "license": "cc-by-sa-40" }] diff --git a/pkgs/development/python-modules/sqlparse/default.nix b/pkgs/development/python-modules/sqlparse/default.nix index 5858779b86ba..e631a5ac5d90 100644 --- a/pkgs/development/python-modules/sqlparse/default.nix +++ b/pkgs/development/python-modules/sqlparse/default.nix @@ -7,11 +7,11 @@ buildPythonPackage rec { pname = "sqlparse"; - version = "0.2.4"; + version = "0.3.0"; src = fetchPypi { inherit pname version; - sha256 = "ce028444cfab83be538752a2ffdb56bc417b7784ff35bb9a3062413717807dec"; + sha256 = "0wxqrm9fpn4phz6rqm7kfd1wwkwzx376gs27nnalwx12q0lwlgbw"; }; checkInputs = [ pytest ]; diff --git a/pkgs/development/python-modules/thinc/default.nix b/pkgs/development/python-modules/thinc/default.nix index 83c9d8f81b2a..a9d1cdee2579 100644 --- a/pkgs/development/python-modules/thinc/default.nix +++ b/pkgs/development/python-modules/thinc/default.nix @@ -28,11 +28,11 @@ buildPythonPackage rec { pname = "thinc"; - version = "7.1.0"; + version = "7.1.1"; src = fetchPypi { inherit pname version; - sha256 = "0j2nfzz154j9331gzwa5rmc2f5ljjan728rhgsx6c7jwg323mmsa"; + sha256 = "0gkz4q53ps3vzz0ww154y0dv6nri5sli8yflh7c26maawvz8wiv8"; }; buildInputs = lib.optionals stdenv.isDarwin (with darwin.apple_sdk.frameworks; [ diff --git a/pkgs/development/python-modules/trackpy/default.nix b/pkgs/development/python-modules/trackpy/default.nix index 2e26679ebf2a..32c8c64c68c7 100644 --- a/pkgs/development/python-modules/trackpy/default.nix +++ b/pkgs/development/python-modules/trackpy/default.nix @@ -45,6 +45,7 @@ buildPythonPackage rec { pytest trackpy --ignore trackpy/tests/test_motion.py \ --ignore trackpy/tests/test_feature_saving.py \ --ignore trackpy/tests/test_feature.py \ + --ignore trackpy/tests/test_plots.py \ --ignore trackpy/tests/test_legacy_linking.py ''; |