1 files changed, 101 insertions, 0 deletions
diff --git a/nixpkgs/pkgs/development/python-modules/niworkflows/default.nix b/nixpkgs/pkgs/development/python-modules/niworkflows/default.nix
new file mode 100644
index 000000000000..494a834c937a
--- /dev/null
+++ b/nixpkgs/pkgs/development/python-modules/niworkflows/default.nix
@@ -0,0 +1,101 @@
+{ lib
+, buildPythonPackage
+, fetchFromGitHub
+, hatch-vcs
+, hatchling
+, pytestCheckHook
+, attrs
+, importlib-resources
+, jinja2
+, looseversion
+, matplotlib
+, nibabel
+, nilearn
+, nipype
+, nitransforms
+, numpy
+, packaging
+, pandas
+, pybids
+, pyyaml
+, scikit-image
+, scipy
+, seaborn
+, svgutils
+, templateflow
+, traits
+, transforms3d
+}:
+
+buildPythonPackage rec {
+  pname = "niworkflows";
+  version = "1.10.0";
+  pyproject = true;
+
+  src = fetchFromGitHub {
+    owner = "nipreps";
+    repo = "niworkflows";
+    rev = "refs/tags/${version}";
+    hash = "sha256-wQPk9imDvomg+NTWk+VeW1TE2QlvMyi1YYVVaznhktU=";
+  };
+
+  postPatch = ''
+    substituteInPlace pyproject.toml --replace '"traits < 6.4"' '"traits"'
+  '';
+
+  nativeBuildInputs = [
+    hatch-vcs
+    hatchling
+  ];
+
+  propagatedBuildInputs = [
+    attrs
+    importlib-resources
+    jinja2
+    looseversion
+    matplotlib
+    nibabel
+    nilearn
+    nipype
+    nitransforms
+    numpy
+    packaging
+    pandas
+    pybids
+    pyyaml
+    scikit-image
+    scipy
+    seaborn
+    svgutils
+    templateflow
+    traits
+    transforms3d
+  ];
+
+  env.SETUPTOOLS_SCM_PRETEND_VERSION = version;
+
+  nativeCheckInputs = [ pytestCheckHook ];
+  preCheck = ''export HOME=$(mktemp -d)'';
+  pytestFlagsArray = [ "niworkflows" ];
+  # try to download data:
+  disabledTests = [
+    "test_GenerateCifti"
+    "ROIsPlot"
+    "ROIsPlot2"
+    "test_SimpleShowMaskRPT"
+    "test_cifti_surfaces_plot"
+    "niworkflows.utils.misc.get_template_specs"
+    "niworkflows.interfaces.cifti._prepare_cifti"
+  ];
+  disabledTestPaths = [ "niworkflows/tests/test_registration.py" ];
+
+  pythonImportsCheck = [ "niworkflows" ];
+
+  meta = with lib; {
+    description = "Common workflows for MRI (anatomical, functional, diffusion, etc.)";
+    homepage = "https://github.com/nipreps/niworkflows";
+    changelog = "https://github.com/nipreps/niworkflows/blob/${src.rev}/CHANGES.rst";
+    license = licenses.asl20;
+    maintainers = with maintainers; [ bcdarwin ];
+  };
+}