1 files changed, 17 insertions, 7 deletions
diff --git a/nixpkgs/pkgs/development/libraries/science/math/petsc/default.nix b/nixpkgs/pkgs/development/libraries/science/math/petsc/default.nix
index 6eeeda9e9284..82a0d063570d 100644
--- a/nixpkgs/pkgs/development/libraries/science/math/petsc/default.nix
+++ b/nixpkgs/pkgs/development/libraries/science/math/petsc/default.nix
@@ -1,28 +1,38 @@
-{ stdenv , fetchurl , blas , gfortran , lapack , python }:
+{ stdenv , darwin , fetchurl , blas , gfortran , lapack , python }:
 
 stdenv.mkDerivation rec {
   pname = "petsc";
-  version = "3.13.1";
+  version = "3.13.4";
 
   src = fetchurl {
     url = "http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/petsc-${version}.tar.gz";
-    sha256 = "0pr604b9pnryl9q0q5arlhs0xdx7wslca0sbz0pzs9qylmz775qp";
+    sha256 = "1n2paqw5c0ja392s1qhp7q2ypwav8s5drxxz2w5m2cn31vbspy1c";
   };
 
-  nativeBuildInputs = [ blas gfortran.cc.lib lapack python ];
+  nativeBuildInputs = [ blas gfortran gfortran.cc.lib lapack python ];
 
-  prePatch = stdenv.lib.optionalString stdenv.isDarwin ''
+  # Upstream does some hot she-py-bang stuff, this change streamlines that
+  # process. The original script in upstream is both a shell script and a
+  # python script, where the shellscript just finds a suitable python
+  # interpreter to execute the python script. See
+  # https://github.com/NixOS/nixpkgs/pull/89299#discussion_r450203444
+  # for more details.
+  prePatch = ''
+    substituteInPlace configure \
+      --replace /bin/sh /usr/bin/python
+  '' + stdenv.lib.optionalString stdenv.isDarwin ''
     substituteInPlace config/install.py \
-      --replace /usr/bin/install_name_tool install_name_tool
+      --replace /usr/bin/install_name_tool ${darwin.cctools}/bin/install_name_tool
   '';
 
   preConfigure = ''
+    export FC="${gfortran}/bin/gfortran" F77="${gfortran}/bin/gfortran"
     patchShebangs .
     configureFlagsArray=(
       $configureFlagsArray
       "--CC=$CC"
       "--with-cxx=$CXX"
-      "--with-fc=0"
+      "--with-fc=$FC"
       "--with-mpi=0"
       "--with-blas-lib=[${blas}/lib/libblas.so,${gfortran.cc.lib}/lib/libgfortran.a]"
       "--with-lapack-lib=[${lapack}/lib/liblapack.so,${gfortran.cc.lib}/lib/libgfortran.a]"