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-rw-r--r--nixpkgs/pkgs/applications/science/biology/delly/default.nix4
-rw-r--r--nixpkgs/pkgs/applications/science/electronics/geda/default.nix12
-rw-r--r--nixpkgs/pkgs/applications/science/electronics/verilator/default.nix4
-rw-r--r--nixpkgs/pkgs/applications/science/electronics/xschem/default.nix4
-rw-r--r--nixpkgs/pkgs/applications/science/logic/proverif/default.nix4
-rw-r--r--nixpkgs/pkgs/applications/science/math/calc/default.nix2
-rw-r--r--nixpkgs/pkgs/applications/science/math/wxmaxima/default.nix4
7 files changed, 21 insertions, 13 deletions
diff --git a/nixpkgs/pkgs/applications/science/biology/delly/default.nix b/nixpkgs/pkgs/applications/science/biology/delly/default.nix
index 1c39d209c34e..52e2980980af 100644
--- a/nixpkgs/pkgs/applications/science/biology/delly/default.nix
+++ b/nixpkgs/pkgs/applications/science/biology/delly/default.nix
@@ -13,13 +13,13 @@
 
 stdenv.mkDerivation (finalAttrs: {
   pname = "delly";
-  version = "1.1.7";
+  version = "1.1.8";
 
   src = fetchFromGitHub {
     owner = "dellytools";
     repo = "delly";
     rev = "v${finalAttrs.version}";
-    hash = "sha256-oBIY8s/ippf+Xw+3QzMwP0Esc/QpiT6yWeAnqpMix6s=";
+    hash = "sha256-IxZPbcM52E1bzy6msGmka6Ykgc+OLWTMhWBCn0E4mFI=";
   };
 
   buildInputs = [
diff --git a/nixpkgs/pkgs/applications/science/electronics/geda/default.nix b/nixpkgs/pkgs/applications/science/electronics/geda/default.nix
index 775bae981339..160928633a3c 100644
--- a/nixpkgs/pkgs/applications/science/electronics/geda/default.nix
+++ b/nixpkgs/pkgs/applications/science/electronics/geda/default.nix
@@ -1,4 +1,4 @@
-{ lib, stdenv, fetchurl, groff, pkg-config, python2, guile, gtk2, flex, gawk, perl }:
+{ lib, stdenv, fetchurl, fetchpatch, autoreconfHook, groff, pkg-config, guile, gtk2, flex, gawk, perl }:
 
 stdenv.mkDerivation rec {
   pname = "geda";
@@ -9,12 +9,20 @@ stdenv.mkDerivation rec {
     hash = "sha256-6GKrJBUoU4+jvuJzkmH1aAERArYMXjmi8DWGY8BCyKQ=";
   };
 
+  patches = [
+    (fetchpatch {
+      name = "geda-1.10.2-drop-xorn.patch";
+      url = "https://gitweb.gentoo.org/repo/gentoo.git/plain/sci-electronics/geda/files/geda-1.10.2-drop-xorn.patch?id=5589cc7bc6c4f18f75c40725a550b8d76e7f5ca1";
+      hash = "sha256-jPQaHjEDwCEfZqDGku+xyIMl5WlWlVcpPv1W6Xf8Grs=";
+    })
+  ];
+
   configureFlags = [
     "--disable-update-xdg-database"
     "--without-libfam"
   ];
 
-  nativeBuildInputs = [ groff pkg-config python2 ];
+  nativeBuildInputs = [ autoreconfHook groff pkg-config ];
   buildInputs = [ guile gtk2 flex gawk perl ];
 
   meta = with lib; {
diff --git a/nixpkgs/pkgs/applications/science/electronics/verilator/default.nix b/nixpkgs/pkgs/applications/science/electronics/verilator/default.nix
index 90601651e510..86d6716eaeb7 100644
--- a/nixpkgs/pkgs/applications/science/electronics/verilator/default.nix
+++ b/nixpkgs/pkgs/applications/science/electronics/verilator/default.nix
@@ -4,13 +4,13 @@
 
 stdenv.mkDerivation rec {
   pname = "verilator";
-  version = "5.012";
+  version = "5.016";
 
   src = fetchFromGitHub {
     owner = pname;
     repo = pname;
     rev = "v${version}";
-    hash = "sha256-Y6GkIgkauayJmGhOQg2kWjbcxYVIob6InMopv555Lb8=";
+    hash = "sha256-MVQbAZXSIdzX7+yKbSrFLLd0j6dfLSXpES3uu6bcPt8=";
   };
 
   enableParallelBuilding = true;
diff --git a/nixpkgs/pkgs/applications/science/electronics/xschem/default.nix b/nixpkgs/pkgs/applications/science/electronics/xschem/default.nix
index 456b939c60ad..826181139c19 100644
--- a/nixpkgs/pkgs/applications/science/electronics/xschem/default.nix
+++ b/nixpkgs/pkgs/applications/science/electronics/xschem/default.nix
@@ -13,13 +13,13 @@
 
 stdenv.mkDerivation rec {
   pname = "xschem";
-  version = "3.1.0";
+  version = "3.4.4";
 
   src = fetchFromGitHub {
     owner = "StefanSchippers";
     repo = "xschem";
     rev = version;
-    sha256 = "sha256-SHpESg5mn9lSDOURQusQUsug8Jqin/W5rqkVgmseSgA=";
+    sha256 = "sha256-1jP1SJeq23XNkOQgcl2X+rBrlka4a04irmfhoKRM1j4=";
   };
 
   nativeBuildInputs = [ bison flex pkg-config ];
diff --git a/nixpkgs/pkgs/applications/science/logic/proverif/default.nix b/nixpkgs/pkgs/applications/science/logic/proverif/default.nix
index 57220aa523cf..5cd0e5ff9e39 100644
--- a/nixpkgs/pkgs/applications/science/logic/proverif/default.nix
+++ b/nixpkgs/pkgs/applications/science/logic/proverif/default.nix
@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   pname = "proverif";
-  version = "2.04";
+  version = "2.05";
 
   src = fetchurl {
     url    = "https://bblanche.gitlabpages.inria.fr/proverif/proverif${version}.tar.gz";
-    sha256 = "sha256:0xgwnp59779xc40sb7ck8rmfn620pilxyq79l3bymj9m7z0mwvm9";
+    hash = "sha256-SHH1PDKrSgRmmgYMSIa6XZCASWlj+5gKmmLSxCnOq8Q=";
   };
 
   strictDeps = true;
diff --git a/nixpkgs/pkgs/applications/science/math/calc/default.nix b/nixpkgs/pkgs/applications/science/math/calc/default.nix
index 4cfc4fb182b8..86ec445d9b3e 100644
--- a/nixpkgs/pkgs/applications/science/math/calc/default.nix
+++ b/nixpkgs/pkgs/applications/science/math/calc/default.nix
@@ -21,7 +21,7 @@ stdenv.mkDerivation (finalAttrs: {
   };
 
   postPatch = ''
-    substituteInPlace Makefile \
+    substituteInPlace Makefile.target \
       --replace '-install_name ''${LIBDIR}/libcalc''${LIB_EXT_VERSION}' '-install_name ''${T}''${LIBDIR}/libcalc''${LIB_EXT_VERSION}' \
       --replace '-install_name ''${LIBDIR}/libcustcalc''${LIB_EXT_VERSION}' '-install_name ''${T}''${LIBDIR}/libcustcalc''${LIB_EXT_VERSION}'
   '';
diff --git a/nixpkgs/pkgs/applications/science/math/wxmaxima/default.nix b/nixpkgs/pkgs/applications/science/math/wxmaxima/default.nix
index c475dbd5ef2b..d30d560f47fd 100644
--- a/nixpkgs/pkgs/applications/science/math/wxmaxima/default.nix
+++ b/nixpkgs/pkgs/applications/science/math/wxmaxima/default.nix
@@ -12,13 +12,13 @@
 
 stdenv.mkDerivation (finalAttrs:{
   pname = "wxmaxima";
-  version = "23.02.1";
+  version = "23.10.0";
 
   src = fetchFromGitHub {
     owner = "wxMaxima-developers";
     repo = "wxmaxima";
     rev = "Version-${finalAttrs.version}";
-    sha256 = "sha256-Lrj/oJNmKlCkNbnCGY2TewCospwajKdWgmKkreHzEIU=";
+    sha256 = "sha256-3zQzpw0KWNAAvML55O2FMlid9j0GtP8OWy1eqifzVwI=";
   };
 
   buildInputs = [