diff options
Diffstat (limited to 'nixpkgs/pkgs/applications/science/molecular-dynamics/gromacs/default.nix')
-rw-r--r-- | nixpkgs/pkgs/applications/science/molecular-dynamics/gromacs/default.nix | 55 |
1 files changed, 55 insertions, 0 deletions
diff --git a/nixpkgs/pkgs/applications/science/molecular-dynamics/gromacs/default.nix b/nixpkgs/pkgs/applications/science/molecular-dynamics/gromacs/default.nix new file mode 100644 index 000000000000..5f7b15f82d23 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/molecular-dynamics/gromacs/default.nix @@ -0,0 +1,55 @@ + +{ stdenv, fetchurl, cmake, + singlePrec ? true, + mpiEnabled ? false, + fftw, + openmpi +}: + + +stdenv.mkDerivation { + name = "gromacs-2018.4"; + + src = fetchurl { + url = "ftp://ftp.gromacs.org/pub/gromacs/gromacs-2018.4.tar.gz"; + sha256 = "14d8mbck1lrmz97vvy322irk557wxh0zdd6n962lm69hqxcf8bkg"; + }; + + buildInputs = [cmake fftw] + ++ (stdenv.lib.optionals mpiEnabled [ openmpi ]); + + cmakeFlags = '' + ${if singlePrec then "-DGMX_DOUBLE=OFF" else "-DGMX_DOUBLE=ON -DGMX_DEFAULT_SUFFIX=OFF"} + ${if mpiEnabled then "-DGMX_MPI:BOOL=TRUE + -DGMX_CPU_ACCELERATION:STRING=SSE4.1 + -DGMX_OPENMP:BOOL=TRUE + -DGMX_THREAD_MPI:BOOL=FALSE" + else "-DGMX_MPI:BOOL=FALSE" } + ''; + + meta = with stdenv.lib; { + homepage = "http://www.gromacs.org"; + license = licenses.gpl2; + description = "Molecular dynamics software package"; + longDescription = '' + GROMACS is a versatile package to perform molecular dynamics, + i.e. simulate the Newtonian equations of motion for systems + with hundreds to millions of particles. + + It is primarily designed for biochemical molecules like + proteins, lipids and nucleic acids that have a lot of + complicated bonded interactions, but since GROMACS is + extremely fast at calculating the nonbonded interactions (that + usually dominate simulations) many groups are also using it + for research on non-biological systems, e.g. polymers. + + GROMACS supports all the usual algorithms you expect from a + modern molecular dynamics implementation, (check the online + reference or manual for details), but there are also quite a + few features that make it stand out from the competition. + + See: http://www.gromacs.org/About_Gromacs for details. + ''; + platforms = platforms.unix; + }; +} |