1 files changed, 39 insertions, 0 deletions
diff --git a/nixpkgs/pkgs/applications/science/misc/toil/default.nix b/nixpkgs/pkgs/applications/science/misc/toil/default.nix
new file mode 100644
index 000000000000..a25fbe7565ce
--- /dev/null
+++ b/nixpkgs/pkgs/applications/science/misc/toil/default.nix
@@ -0,0 +1,39 @@
+{ lib, fetchFromGitHub, python3Packages }:
+
+python3Packages.buildPythonApplication rec {
+  pname = "toil";
+  version = "5.4.0";
+
+  src = python3Packages.fetchPypi {
+    inherit pname version;
+    sha256 = "73c0648828bd3610c07b7648dd06d6ec27efefdb09473bf01d05d91eb899c9fd";
+  };
+
+  postPatch = ''
+    substituteInPlace setup.py \
+      --replace "docker = " "docker = 'docker' #" \
+      --replace "addict = " "addict = 'addict' #"
+  '';
+
+  propagatedBuildInputs = with python3Packages; [
+    addict
+    docker
+    pytz
+    pyyaml
+    enlighten
+    psutil
+    python-dateutil
+    dill
+  ];
+  checkInputs = with python3Packages; [ pytestCheckHook ];
+
+  pytestFlagsArray = [ "src/toil/test" ];
+  pythonImportsCheck = [ "toil" ];
+
+  meta = with lib; {
+    homepage = "https://toil.ucsc-cgl.org/";
+    license = with licenses; [ asl20 ];
+    description = "Workflow engine written in pure Python";
+    maintainers = with maintainers; [ veprbl ];
+  };
+}