diff options
Diffstat (limited to 'nixpkgs/pkgs/applications/science/math/sage/sage-src.nix')
| -rw-r--r-- | nixpkgs/pkgs/applications/science/math/sage/sage-src.nix | 154 |
1 files changed, 15 insertions, 139 deletions
diff --git a/nixpkgs/pkgs/applications/science/math/sage/sage-src.nix b/nixpkgs/pkgs/applications/science/math/sage/sage-src.nix index 1fb605b35998..91e855777f0e 100644 --- a/nixpkgs/pkgs/applications/science/math/sage/sage-src.nix +++ b/nixpkgs/pkgs/applications/science/math/sage/sage-src.nix @@ -24,14 +24,14 @@ let ); in stdenv.mkDerivation rec { - version = "9.2"; + version = "9.3.rc4"; pname = "sage-src"; src = fetchFromGitHub { owner = "sagemath"; repo = "sage"; rev = version; - sha256 = "103j8d5x6szl9fxaz0dvdi4y47q1af9h9y5hmjh2xayi62qmp5ql"; + sha256 = "sha256-LDY07By2j6JagkgT9zeDJ93+m2/oXXEnDRTDzmR8ftk="; }; # Patches needed because of particularities of nix or the way this is packaged. @@ -53,14 +53,6 @@ stdenv.mkDerivation rec { # Parallelize docubuild using subprocesses, fixing an isolation issue. See # https://groups.google.com/forum/#!topic/sage-packaging/YGOm8tkADrE ./patches/sphinx-docbuild-subprocesses.patch - - # Register sorted dict pprinter earlier (https://trac.sagemath.org/ticket/31053) - (fetchSageDiff { - base = "9.3.beta4"; - name = "register-pretty-printer-earlier.patch"; - rev = "d658230ce06ca19f4a3b3a4576297ee82f2d2151"; - sha256 = "sha256-9mPUV7K5PoLDH2vVaYaOfvDLDpmxU0Aj7m/eaXYotDs="; - }) ]; # Since sage unfortunately does not release bugfix releases, packagers must @@ -70,31 +62,6 @@ stdenv.mkDerivation rec { # To help debug the transient error in # https://trac.sagemath.org/ticket/23087 when it next occurs. ./patches/configurationpy-error-verbose.patch - - # fix intermittent errors in Sage 9.2's psage.py (this patch is - # already included in Sage 9.3): https://trac.sagemath.org/ticket/30730 - (fetchSageDiff { - base = "9.2.rc2"; - name = "fix-psage-is-locked.patch"; - rev = "75df605f216ddc7b6ca719be942d666b241520e9"; - sha256 = "0g9pl1wbb3sgs26d3bvv70cpa77sfskylv4kd255y1794f1fgk4q"; - }) - - # fix intermittent errors in sagespawn.pyx: https://trac.sagemath.org/ticket/31052 - (fetchSageDiff { - base = "9.2"; - name = "sagespawn-implicit-casting.patch"; - rev = "2959ac792ebd6107fe87c9af1541083de5ba02d6"; - sha256 = "sha256-bWIpEGir9Kawak5CJegBMNcHm/CqhWmdru+emeSsvO0="; - }) - - # fix intermittent errors in doctest/test.py: https://trac.sagemath.org/ticket/26912 - (fetchSageDiff { - base = "9.3.beta8"; - name = "set-cysignals-crash-ndebug.patch"; - rev = "ca5257a5d0f32efc9f8f07e126020856270b1a18"; - sha256 = "sha256-KViw63xE3O0eUiOYzoxNrr4NL+csql9GPJLDJCf/EZs="; - }) ]; # Patches needed because of package updates. We could just pin the versions of @@ -111,120 +78,29 @@ stdenv.mkDerivation rec { # ignore a deprecation warning for usage of `cmp` in the attrs library in the doctests ./patches/ignore-cmp-deprecation.patch - - # adapt sage's Image class to pillow 8.0.1 (https://trac.sagemath.org/ticket/30971) - (fetchSageDiff { - base = "9.3.beta2"; - name = "pillow-8.0.1-update.patch"; - rev = "f05f2d0aac9c4b5abe68105cee2cc7f2c8461847"; - sha256 = "sha256-uY2UlgSd5hhOUUukB4Xc3Gjy0/e7p/qyq9jdvz10IOs="; - }) - - # don't use deprecated numpy type aliases (https://trac.sagemath.org/ticket/31364) - (fetchSageDiff { - base = "9.3.beta7"; - name = "dont-use-deprecated-numpy-type-aliases.patch"; - rev = "dfdef60515d4a4269e82d91280f76a7fdf10bf97"; - sha256 = "sha256-77/3LkT5J7DQN8IPlGJKB6ZcJPaF7xwje06JNns+0AE="; - }) - - # fix test output with sympy 1.7 (https://trac.sagemath.org/ticket/30985) - ./patches/sympy-1.7-update.patch - - # workaround until we use sage's fork of threejs, which contains a "version" file - ./patches/dont-grep-threejs-version-from-minified-js.patch - - # updated eclib output has punctuation changes and tidier whitespace - ./patches/eclib-20210223-test-formatting.patch - - # upgrade arb to 2.18.1 (https://trac.sagemath.org/ticket/28623) - (fetchSageDiff { - base = "9.3.beta3"; - name = "arb-2.18.1-update.patch"; - rev = "0c9c4ed35c2eaf34ae0d19387c07b7f460e4abce"; - sha256 = "sha256-CjOJIsyyVCziAfvE6pWSihPO35IZMcY2/taXAsqhPLY="; - }) - - # giac 1.6.0-47 update (https://trac.sagemath.org/ticket/30537) - (fetchSageDiff { - base = "9.3.beta7"; - name = "giac-1.6.0-47-update.patch"; - rev = "f05720bf63dfaf33a4e3b6d3ed2c2c0ec46b5d31"; - sha256 = "sha256-gDUq+84eXd5GxLBWUSI61GMJpBF2KX4LBVOt3mS1NF8="; - }) - - # Make gcd/lcm interact better with pari and gmpy2 (https://trac.sagemath.org/ticket/30849) - # needed for pari 2.13.1 update, which we will do in the future - (fetchSageDiff { - base = "9.3.beta0"; - name = "make-gcd-lcm-interact-better-with-pari-and-gmpy2.patch"; - rev = "75c1516f0abb9e6f8c335e38e4031f6ef674ed30"; - sha256 = "sha256-RukkieIZcXNrju904H2oyGKdtpdE+9vNzvyjN2IBNg0="; - }) - - # cypari 2.1.2 update (https://trac.sagemath.org/ticket/31029) - (fetchSageDiff { - base = "9.3.beta3"; - name = "cypari-2.1.2-update.patch"; - rev = "b9aadfd08e81d74ca7c229bb80eb853b592887d0"; - sha256 = "sha256-eKaMy7kpu+YKdL8bPStgocxBCTfc2Z/10RrGy2LENFw="; - }) ]; patches = nixPatches ++ bugfixPatches ++ packageUpgradePatches; postPatch = '' - # make sure shebangs etc are fixed, but sage-python23 still works - find . -type f -exec sed \ - -e 's/sage-python23/python3/g' \ - -i {} \; - - echo '#!${runtimeShell} - python3 "$@"' > build/bin/sage-python23 - # Make sure sage can at least be imported without setting any environment # variables. It won't be close to feature complete though. sed -i \ - "s|var('SAGE_ROOT'.*|var('SAGE_ROOT', '$out')|" \ + "s|var(\"SAGE_ROOT\".*|var(\"SAGE_ROOT\", \"$out\")|" \ src/sage/env.py - # Do not use sage-env-config (generated by ./configure). - # Instead variables are set manually. - echo '# do nothing' > src/bin/sage-env-config - ''; - - # Test src/doc/en/reference/spkg/conf.py will fail if - # src/doc/en/reference/spkg/index.rst is not generated. It is - # generated by src/doc/bootstrap, so I've copied the relevant part - # here. An alternative would be to create an empty - # src/doc/en/reference/spkg/index.rst file. - configurePhase = '' - OUTPUT_DIR="src/doc/en/reference/spkg" - mkdir -p "$OUTPUT_DIR" - OUTPUT_INDEX="$OUTPUT_DIR"/index.rst - cat > "$OUTPUT_INDEX" <<EOF - - External Packages - ================= - - .. toctree:: - :maxdepth: 1 - - EOF - for PKG_SCRIPTS in build/pkgs/*; do - if [ -d "$PKG_SCRIPTS" ]; then - PKG_BASE=$(basename "$PKG_SCRIPTS") - if [ -f "$PKG_SCRIPTS"/SPKG.rst ]; then - # Instead of just copying, we may want to call - # a version of sage-spkg-info to format extra information. - cp "$PKG_SCRIPTS"/SPKG.rst "$OUTPUT_DIR"/$PKG_BASE.rst - echo >> "$OUTPUT_INDEX" " $PKG_BASE" - fi - fi - done - cat >> "$OUTPUT_INDEX" <<EOF - .. include:: ../footer.txt - EOF + # src/doc/en/reference/spkg/conf.py expects index.rst in its directory, + # a list of external packages in the sage distribution (build/pkgs) + # generated by the bootstrap script (which we don't run). this is not + # relevant for other distributions, so remove it. + rm src/doc/en/reference/spkg/conf.py + sed -i "/spkg/d" src/doc/en/reference/index.rst + + # the bootstrap script also generates installation instructions for + # arch, debian, fedora, cygwin and homebrew using data from build/pkgs. + # we don't run the bootstrap script, so disable including the generated + # files. docbuilding fails otherwise. + sed -i "/literalinclude/d" src/doc/en/installation/source.rst ''; buildPhase = "# do nothing"; |