diff options
Diffstat (limited to 'nixpkgs/pkgs/applications/science/biology/plink-ng/default.nix')
| -rw-r--r-- | nixpkgs/pkgs/applications/science/biology/plink-ng/default.nix | 17 |
1 files changed, 11 insertions, 6 deletions
diff --git a/nixpkgs/pkgs/applications/science/biology/plink-ng/default.nix b/nixpkgs/pkgs/applications/science/biology/plink-ng/default.nix index 52f8f70b7796..0a31ff6ba4fd 100644 --- a/nixpkgs/pkgs/applications/science/biology/plink-ng/default.nix +++ b/nixpkgs/pkgs/applications/science/biology/plink-ng/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchFromGitHub, zlib, openblas, darwin}: +{ stdenv, fetchFromGitHub, zlib, blas, lapack, darwin}: stdenv.mkDerivation rec { pname = "plink-ng"; @@ -11,14 +11,20 @@ stdenv.mkDerivation rec { sha256 = "1zhffjbwpd50dxywccbnv1rxy9njwz73l4awc5j7i28rgj3davcq"; }; - buildInputs = [ zlib ] ++ (if stdenv.isDarwin then [ darwin.apple_sdk.frameworks.Accelerate ] else [ openblas ]) ; + buildInputs = [ zlib ] ++ (if stdenv.isDarwin then [ darwin.apple_sdk.frameworks.Accelerate ] else [ blas lapack ]) ; - buildPhase = '' + preBuild = '' sed -i 's|zlib-1.2.8/zlib.h|zlib.h|g' *.c *.h ${if stdenv.cc.isClang then "sed -i 's|g++|clang++|g' Makefile.std" else ""} - make ZLIB=-lz ${if stdenv.isDarwin then "" else "BLASFLAGS=-lopenblas"} -f Makefile.std + + makeFlagsArray+=( + ZLIB=-lz + BLASFLAGS="-lblas -lcblas -llapack" + ); ''; + makefile = "Makefile.std"; + installPhase = '' mkdir -p $out/bin cp plink $out/bin @@ -26,9 +32,8 @@ stdenv.mkDerivation rec { meta = { description = "A comprehensive update to the PLINK association analysis toolset"; - homepage = https://www.cog-genomics.org/plink2; + homepage = "https://www.cog-genomics.org/plink2"; license = stdenv.lib.licenses.gpl3; platforms = stdenv.lib.platforms.linux; }; } - |